ID: uc001okr.2
GENE: RAD9A(2)
chr11:67160767-67161016+


(1)
AGO1.ip OTHER.mut 		(4)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(25)
CELL-LINE 		(1)
FIBROBLAST 		(5)
HEART 		(2)
HELA 		(3)
LIVER 		(2)
OTHER 		(22)
SKIN 		(1)
XRN.ip

Sense strand
AAGGTAAGCAGGTCTTTCAAGGCATTCCAAGCATAAGGAAGAGCATGAATGAGGCCTAGAAGGATGCCAGTGCCCGAGGTGACGTGGGAGCCCTTTTCCCAGAGTTACATGCTGGGCCCATGATGGGTGTGGGCCTGCATGGGACAGGAGAGCTTGTTGCAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGA
......................................................................................................................................((((((((((.((((..((((...((..((........))..))..)))).)))).))))))))))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR189782SRR189786SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR189784TAX577738(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGT.................................................23126.0026.00-6.00-1.002.00--3.001.00-1.00---1.00------1.00----1.00----------------1.001.00----1.00-----1.001.00-1.00----1.001.00-------1.00----
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTGC..........................................................................................25116.0016.00-----------1.00---1.002.00-----2.00-----------------1.001.00-----1.00--1.00-1.00------1.00-1.00------1.001.00----1.00--
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTT............................................................................................23111.0011.006.00-----------1.00--1.00----2.00--------------------------------1.00-----------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTG...........................................................................................2419.009.001.00------------2.001.00---------------------1.00-1.00---1.00--------------1.00----1.00--------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTT............................................................................................2419.009.007.00----------1.00-------------------------------------------------------------1.00---
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAG..................................................2218.008.001.00--1.00--------------------1.00---------1.00-----------1.00-------1.00-----1.00---------1.00------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGA.................................................2317.008.00-----4.00--3.00--------------------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTGT..........................................................................................2515.009.003.00-----------------2.00----------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAGA.................................................2214.003.004.00----------------------------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAG..................................................2113.003.00----------2.00--------------------------------------------------------1.00---------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTTGTTGC..........................................................................................2713.003.00--3.00--------------------------------------------------------------------------
............................................................................................................................................GGGACAGGAGAGCTTGTTGC..........................................................................................2013.003.00---------3.00-------------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGTAT...............................................2512.0026.00-----------------2.00-----------------------------------------------------------
...................................................................................................................................................................GATGTGATGCTAGGCTGAG....................................................................1912.002.00--2.00--------------------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCATT.................................................232.000.00---------------------1.00-------------1.00-----------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTT...............................................................................................2212.002.00-------------------------------1.00-1.00-------------------------------------------
..........................................................................CGAGGTGACGTGGGAGCCCT............................................................................................................................................................2012.002.00------2.00----------------------------------------------------------------------
.....................................................................................................................................................................................GGTGTCTTATCCCATGCAGTTT...............................................2212.001.00---------1.00--------------------------------------------------------1.00----------
..................................................................................................................................................................AGATGTGATGCTAGGCTGA.....................................................................1912.002.00------2.00----------------------------------------------------------------------
.........................................................................................................................................CATGGGACAGGAGAGCTTGTTGC..........................................................................................2311.001.00------------------------1.00----------------------------------------------------
.....................................................................................................................................................................................GGTGTCTTATCCCATGCAGT.................................................2011.001.00---------------------------1.00-------------------------------------------------
......AGCAGGTCTTTCAAGGCATGTAA.............................................................................................................................................................................................................................231.000.00-----------------------1.00-----------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTCGC..........................................................................................2511.001.00----1.00------------------------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTT...........................................................................................2411.0011.001.00----------------------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAT..................................................221.000.00-------1.00---------------------------------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTT...........................................................................................2511.009.00------------1.00----------------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGGT............................................................................................231.000.001.00----------------------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCCGT.................................................231.000.00-------------------1.00---------------------------------------------------------
................................................................................................................................................................AGAGATGTGATGCTATTTG.......................................................................191.000.00-------------------1.00---------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATG.....................................................1811.001.00---1.00-------------------------------------------------------------------------
.....................................................................................................................................................................TGTGATGCTAGGCTGAGGTGT................................................................2111.001.00----1.00------------------------------------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTAA..........................................................................................2611.009.00---------------------------------------------------1.00-------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAGT.................................................2211.001.00-----------------------------------------------------------------1.00-----------
........................................................TAGAAGGATGCCAGTATTG...............................................................................................................................................................................191.000.00------------------------------------------------1.00----------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGT.............................................................................................2211.001.00---------------------------------------------------------------------------1.00-
..................................................................................................................................................................................TGAGGTGTCTTATCCCATG.....................................................1911.001.00---1.00-------------------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCACT.................................................231.000.00-----------------------1.00-----------------------------------------------------
....................................................................................................................................................................................AGGTGTCTTATCCCATGCAGT.................................................2111.001.00-----------------------------1.00-----------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTTT..............................................................................................2311.002.00---------------------------------------1.00-------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAG..................................................................................................1911.001.00--------------------------------1.00--------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGAT............................................................................................241.000.00------------------------------1.00----------------------------------------------
...............................................................................................................................................................................................................................ACTGGCGATGCTGGAGA..........1711.001.00----------------------------1.00------------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTGCAAT.......................................................................................291.000.00---------------------------------------------1.00-------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGC.................................................................................................1911.001.00-----------1.00-----------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCATTT................................................241.000.00-------------------------------------1.00---------------------------------------
..........................................................GAAGGATGCCAGTGC.................................................................................................................................................................................1570.140.14----------------------------------------------------------------------------0.14
........................................GAGCATGAATGAGGC...................................................................................................................................................................................................1580.120.12-------------------------0.12---------------------------------------------------

Antisense strand
AAGGTAAGCAGGTCTTTCAAGGCATTCCAAGCATAAGGAAGAGCATGAATGAGGCCTAGAAGGATGCCAGTGCCCGAGGTGACGTGGGAGCCCTTTTCCCAGAGTTACATGCTGGGCCCATGATGGGTGTGGGCCTGCATGGGACAGGAGAGCTTGTTGCAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGA
......................................................................................................................................((((((((((.((((..((((...((..((........))..))..)))).)))).))))))))))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR189782SRR189786SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR189784TAX577738(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.................................TAAGGAAGAGCATGAA......................................................................................................................................................................................................... 161.000.00-----------------------------------------------------------------------1.00-----
............................................................................................................................................GGGACAGGAGAGCTTTGTC........................................................................................... 191.000.00---1.00-------------------------------------------------------------------------
...........................................................................................................CATGCTGGGCCCATGATGGG........................................................................................................................... 2011.001.00-------------------------1.00---------------------------------------------------