ID: uc001obx.23
GENE: ATG2A(23)
chr11:64675087-64675269-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(19)
CELL-LINE 		(2)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
GTCCACATCTTTCTGCCCAGCAAGGAGGTCTACGAGAGCATCTACAACAGGTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAGGATCAACAACGACCTGCTCATGTGGGAGCCTGCAGATCTGCTTCCCACCC
......................................................................(((((((..((((((..(((((((........)))..))))..))))))))))))).........................................................
...............................................................64...................................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		TAX577588(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
....................................................................CAGGGCGGGACTGGACACTGG..............................................................................................21128.0028.00-5.0012.003.003.00-1.001.00-1.00------------1.00-------------------1.00-
....................................................................CAGGGCGGGACTGGACACTGGGT............................................................................................23126.0026.0013.002.001.00-1.001.001.00--1.00-----1.00-1.00------1.00---1.00------1.00----1.00---
.....................................................................AGGGCGGGACTGGACACTGGGTGG..........................................................................................2419.009.003.00--1.00-2.00--1.001.00----------------------------1.00-----
....................................................................CAGGGCGGGACTGGACACT................................................................................................1918.008.00-4.003.00------------1.00----------------------------
.....................................................................AGGGCGGGACTGGACACTGGGT............................................................................................2218.008.001.002.00---3.001.00---------------------------1.00---------
.....................................................................AGGGCGGGACTGGACACTGG..............................................................................................2015.005.00-------1.00-----1.00--1.00-1.00--------------------1.00----
....................................................................CAGGGCGGGACTGGACACTGGA.............................................................................................2215.0028.00-2.00---1.00----------1.00----1.00----------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGT..........................................................................................244.000.00----2.00------------------1.00-------------1.00------
....................................................................CAGGGCGGGACTGGACACTGGG.............................................................................................2214.004.00---3.00---------1.00------------------------------
....................................................................CAGGGCGGGACTGGACACTGT..............................................................................................2113.001.00-1.00------1.00--------------------1.00--------------
....................................................................CAGGGCGGGACTGGACACTGGGTTT..........................................................................................2513.0026.001.00--2.00----------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTGGA.........................................................................................263.000.00----3.00---------------------------------------
..................................................GTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAG..................................................8313.003.00----------3.00---------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTA...........................................................................................2313.008.003.00-------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGAA............................................................................................2313.0028.003.00-------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGATC...........................................................................................2413.0028.00-----------3.00--------------------------------
.....................................................................AGGGCGGGACTGGACACTGGG.............................................................................................2112.002.00--2.00-----------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGGA.........................................................................................2512.009.001.00--------------------------------1.00----------
....................................................................CAGGGCGGGACTGGACACTGGGA............................................................................................2312.004.00--1.00--------------------------------------1.00--
....................................................................CAGGGCGGGACTGGACACTGGGTGTA.........................................................................................262.000.00----2.00---------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGT.............................................................................................2212.0028.00-2.00------------------------------------------
.....................................................................AGGGCGGGACTGGACACTGT..............................................................................................202.000.00-2.00------------------------------------------
...................................................................GCAGGGCGGGACTGGACACTGGG.............................................................................................2312.002.002.00-------------------------------------------
...................................................................GCAGGGCGGGACTGGACACTGT..............................................................................................222.000.00---2.00----------------------------------------
.............................................................................................................CTGCTGTCCACCCGCCTATCT.....................................................2112.002.00--------------1.00----------1.00------------------
....................................................................CAGGGCGGGACTGGACACTGTTT............................................................................................2311.001.00---1.00----------------------------------------
...........................................................................................................ACCTGCTGTCCACCCGCCTATC......................................................2211.001.001.00-------------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTTG..........................................................................................2411.008.001.00-------------------------------------------
.............................................................................ACTGGACACTGGGTGCTTG.......................................................................................191.000.00------------------------------1.00-------------
....................................................................CAGGGCGGGACTGGACACTG...............................................................................................2011.001.00-------1.00------------------------------------
.....................................................................AGGGCGGGACTGGACACCGGA.............................................................................................2121.000.50-------1.00------------------------------------
.....................................................................AGGGCGGGACTGGACACTAGGT............................................................................................221.000.00-----1.00--------------------------------------
...................................................................GCAGGGCGGGACTGGACACTGGT.............................................................................................231.000.00-------------------------------1.00------------
....................................................................CAGGGCGGGACTGGACACTGGGTGGTTT.......................................................................................281.000.00-----1.00--------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGGCA..........................................................................................2511.004.00--------------------------1.00-----------------
......................AGGAGGTCTACGAGAGCATCTACA.........................................................................................................................................2411.001.00--------------------1.00-----------------------
..................................................................AGCAGGGCGGGACTGGACACTGA..............................................................................................231.000.00------1.00-------------------------------------
...........................................................................................................ACCTGCTGTCCACCCGCCTATCT.....................................................2311.001.00---------------------------1.00----------------
..............................................................................................................................................................GAGCCTGCAGATCTGCTTCCCA...2211.001.00------------1.00-------------------------------
.............................................................................................................CTGCTGTCCACCCGCCTATCTCTT..................................................241.000.00------------------------------------1.00-------
....................................................................CAGGGCGGGACTGGACACTGAAA............................................................................................2311.001.00--------1.00-----------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGA..........................................................................................241.000.00-------------------1.00------------------------
....................................................................CAGGGCGGGACTGGACACTGGGAA...........................................................................................2411.004.001.00-------------------------------------------
.......................................................................................................................................................CATGTGGGAGCCTGCAGAT.............1911.001.00--------------------------------1.00-----------
....................................................................CAGGGCGGGACTGGACACTGTAA............................................................................................2311.001.00-------1.00------------------------------------
...........................................................................................................................................CAACGACCTGCTCATGTGGGAGCCTGCAGA..............3011.001.00------1.00-------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGTTT........................................................................................261.000.00-----------------1.00--------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTAGA.........................................................................................2511.008.00-----1.00--------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGATGT..........................................................................................2511.0028.00--------1.00-----------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGG............................................................................................2211.002.00--1.00-----------------------------------------
.....................................................................AGGGCGGGACTGGACAC.................................................................................................1720.500.50---------0.50----------------------------------
.....................AAGGAGGTCTACG.....................................................................................................................................................1370.140.14-------------------------------------------0.14

Antisense strand
GTCCACATCTTTCTGCCCAGCAAGGAGGTCTACGAGAGCATCTACAACAGGTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAGGATCAACAACGACCTGCTCATGTGGGAGCCTGCAGATCTGCTTCCCACCC
......................................................................(((((((..((((((..(((((((........)))..))))..))))))))))))).........................................................
...............................................................64...................................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		TAX577588(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.........................................................CCCGGGGCCAGCAGGGCGTC.......................................................................................................... 201.000.00--------------1.00-----------------------------
......................................................................................................................................................................AGATCTGCTTCCCACCAA 181.000.00------------1.00-------------------------------