ID: uc001obh.2
GENE: MAP4K2(23)
chr11:64568454-64568632-


(2)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(6)
HEART 		(2)
HELA 		(2)
OTHER 		(21)
SKIN 		(1)
XRN.ip

Sense strand
CTGACAGCGTCTGTGGCCAAGAGGAGGTCTTTCATTGGGACTCCCTACTGGTGAGGCTGCGCCTGGGGCGGAGGGGTAGGGGCCACAGAGCAGGGCACCCGGCCATCCCATCTGTGACCCCACCTCTAGGATGGCTCCCGAGGTGGCTGCTGTGGAGCGCAAAGGTGGCTACAATGAGC
.......................................................................((((((.((((.((((((....(((.....)))......)))))).))))))))))....................................................
.................................................................66.............................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		GSM339994(GSM339994)
hues6. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
............................................................................................................CATCTGTGACCCCACCTCTAG..................................................21116.0016.00--4.00--1.00----1.00----1.001.00-----------------1.001.00-1.001.00-1.00---------1.00---1.00-1.00-----------
......................................................................GAGGGGTAGGGGCCACAGAGCAG......................................................................................23113.0013.00-3.00-----1.00-1.00-------1.00---1.00-----1.00--1.00-----1.00----1.00------1.00-----------1.00-------
............................................................................................................CATCTGTGACCCCACCTCTAGT.................................................22111.0016.00--1.001.00-------2.00--1.00---1.00-------1.00------------1.00-----1.00-------------1.00----1.00---
......................................................................GAGGGGTAGGGGCCACAGAG.........................................................................................2019.009.007.00------1.00-------------------------1.00----------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCTAG..................................................2216.006.00----1.00-2.00------------1.00--------------------------1.00-----------1.00---------
............................................................................................................CATCTGTGACCCCACCTCTAGA.................................................2213.0016.00----1.001.00-------------------------1.00------------------------------------
............................................................................................................CATCTGTGACCCCACCTCTAGTT................................................2313.0016.00-3.00------------------------------------------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCT....................................................2012.002.00----------------------------------------------------1.00---------1.00-----
...........................................................................................................CCATCTGTGACCCCACCTCTAA..................................................2212.001.00--1.00-1.00---------------------------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCTAGTA................................................2312.0016.00-------------------------1.00-----------------1.00------------------------
......................................................................GAGGGGTAGGGGCCACAGAGCA.......................................................................................2212.002.00------------2.00-------------------------------------------------------
..GACAGCGTCTGTGGCCAAGAGGAG.........................................................................................................................................................2411.001.00---1.00----------------------------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCTAGTAA...............................................2411.0016.00--------1.00-----------------------------------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCTCG..................................................2211.002.00------1.00-------------------------------------------------------------
........................................................CTGCGCCTGGGGCGGCGGG........................................................................................................191.000.00-------------1.00------------------------------------------------------
.TGACAGCGTCTGTGGCCAAGAGGAG.........................................................................................................................................................2511.001.00------------------------------------------1.00-------------------------
....................................................................CGGAGGGGTAGGGGCCACAGAGCAT......................................................................................251.000.00-----------------------------------------------1.00--------------------
...........................................................................................................CCATCTGTGACCCCACCTCTA...................................................2111.001.00----1.00---------------------------------------------------------------
...........................................................................................................................................GAGGTGGCTGCTGTGGAGCGC...................2111.001.00---1.00----------------------------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCTAGAAA...............................................2411.0016.00---------------------------------------------------1.00----------------
.................................................................................................................................................GCTGCTGTGGAGCGCAAAGGTGGCT.........2511.001.00-----------------------1.00--------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCCAG..................................................211.000.00-------------------------------------------------1.00------------------
............................................................................................................CATCTGTGACCCCACCTCTAT..................................................2111.001.00---------------1.00----------------------------------------------------
................................................................................................ACCCGGCCATCCCATAG..................................................................171.000.00------------------------1.00-------------------------------------------
....................................................................CGGAGGGGTAGGGGCCACAGCGCT.......................................................................................241.000.00----------1.00---------------------------------------------------------
..................................................................................................................................................CTGCTGTGGAGCGCAAAGG..............1911.001.00-----------------------------------------------------------------1.00--
..............................TTCATTGGGACTCCCTACTGG................................................................................................................................2121.001.00----------------0.50-------------------------------------------------0.50-
.....................................................................GGAGGGGTAGGGGCCACAGAGCAT......................................................................................241.000.00--------1.00-----------------------------------------------------------
...................................................................................................................................................TGCTGTGGAGCGCAAAGGTGGCT.........2311.001.00--------------------1.00-----------------------------------------------
.............................................TACTGGTGAGGCTGCCCC....................................................................................................................181.000.00----------------------1.00---------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCTA...................................................2011.001.00---------------------------------------------------------1.00----------
............................................................................................................CATCTGTGACCCCACCTCTATT.................................................2211.001.00----------------------------1.00---------------------------------------
...............................................................TGGGGCGGAGGGGTAGGGGTA...............................................................................................211.000.00-----------------------------1.00--------------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCTAT..................................................2211.001.00-------------------------------------------------------1.00------------
..GACAGCGTCTGTGGCCAAGAGGAGGT.......................................................................................................................................................2611.001.00---1.00----------------------------------------------------------------
......................................................................GAGGGGTAGGGGCCACAGAGCAGA.....................................................................................2411.0013.00-----1.00--------------------------------------------------------------
......................................................................GAGGGGTAGGGGCCACAGAGCAGT.....................................................................................2411.0013.00-------------------------------------------------------------1.00------
...........................................................................................................CCATCTGTGACCCCACCTCTAGA.................................................2311.006.00-----------------------------------------------------1.00--------------
...........................................................................GTAGGGGCCACAGAGCAGAA....................................................................................201.000.00--------------1.00-----------------------------------------------------
..........................................................................................................................................CGAGGTGGCTGCTGTGGA.......................1811.001.00--------------------------------------------1.00-----------------------
..............................TTCATTGGGACTCCCTACTG.................................................................................................................................2020.500.50-------------------------------------------------------------------0.50
............................................................................................................................................AGGTGGCTGCTGTGGA.......................1670.140.14---0.14----------------------------------------------------------------

Antisense strand
CTGACAGCGTCTGTGGCCAAGAGGAGGTCTTTCATTGGGACTCCCTACTGGTGAGGCTGCGCCTGGGGCGGAGGGGTAGGGGCCACAGAGCAGGGCACCCGGCCATCCCATCTGTGACCCCACCTCTAGGATGGCTCCCGAGGTGGCTGCTGTGGAGCGCAAAGGTGGCTACAATGAGC
.......................................................................((((((.((((.((((((....(((.....)))......)))))).))))))))))....................................................
.................................................................66.............................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		GSM339994(GSM339994)
hues6. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
................................................................................................ACCCGGCCATCCCATCTG................................................................. 181.000.00---------------------------------------------------------------1.00----
.......................................................GCTGCGCCTGGGGCGGTC.......................................................................................................... 181.000.00---------1.00----------------------------------------------------------
............................................................................................................................................AGGTGGCTGCTGTGGATCCG................... 2071.000.00--------------------------------1.00-----------------------------------
..............................................................................................GCACCCGGCCATCCCAGT................................................................... 181.000.00-------------1.00------------------------------------------------------
..........................................................................................................CCCATCTGTGACCCC.......................................................... 1590.110.11---0.11----------------------------------------------------------------