ID: uc001obg.5
GENE: MAP4K2(5)
chr11:64559509-64559693-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(10)
B-CELL 		(6)
BRAIN 		(36)
BREAST 		(45)
CELL-LINE 		(5)
CERVIX 		(2)
FIBROBLAST 		(8)
HEART 		(7)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(30)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGCTCCTGCTGCAGTGGTATGAGCCGCTGCAGAAGTTTCTGCTGCTGAAGGTGAGGGGCGGTGGGGGGAGGCCCAGGGCACCCTCAGAGCTCTGGGGGGAGAAATGGAGACCTGAGCATCCCTGCTGCCCCCTAGAACTTCTCCAGCCCTCTGCCCAGCCCAGCTGGGATGCTGGAGCCGCTGGT
......................................................(((((((..((((...((.((((...(((((((....)))))))............)))).)).))))..)))))))......................................................
..................................................51..................................................................................135................................................
SizePerfect hitTotal NormPerfect NormSRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029128(GSM416757)
H520. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM956925Ago2D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR029124(GSM416753)
HeLa. (hela)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040039(GSM532924)
G531T. (cervix)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR191529(GSM715639)
131genomic small RNA (size selected RNA from . (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR040006(GSM532891)
G601N. (cervix)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191520(GSM715630)
89genomic small RNA (size selected RNA from t. (breast)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029127(GSM416756)
A549. (cell line)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191508(GSM715618)
152genomic small RNA (size selected RNA from . (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		DRR001483(DRX001037)
Hela long cytoplasmic cell fraction, control. (hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015447(SRR015447)
nuclear small RNAs. (breast)
..................................................................................................................AGCATCCCTGCTGCCCCCTAGT.................................................221120.0052.006.00-4.008.00-6.00-1.002.002.001.005.00-4.001.001.001.00-2.001.001.003.001.003.002.003.001.00----1.002.00-1.001.00-----2.002.003.00-1.00--1.00-2.00-1.00-2.002.001.00--1.002.00-2.00----2.001.00-2.002.00---1.00-1.001.001.00---1.00--1.00--1.00--------1.001.00--1.001.001.00-------1.00-1.00-1.001.001.00-1.00-----1.001.00----------1.001.001.00--1.001.00---1.00--1.00-----------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGA.................................................22193.0093.007.00-4.002.00-2.0010.003.003.001.00-1.006.002.004.002.002.001.00-1.00-1.001.00-1.00--3.00-1.002.002.001.00---2.00--1.00------2.001.00----1.001.00-------2.00-2.00-1.00--------1.00-1.00---1.00----------------1.00--1.00----------1.00-------1.00-1.00---1.00---1.001.00-----1.00----1.00-----1.00------1.00----1.00--1.00
..................................................................................................................AGCATCCCTGCTGCCCCCTAG..................................................21152.0052.004.00--1.00-1.00-6.00--2.00----2.001.003.002.00-2.00-1.001.00-1.001.00--------2.00-2.00--1.00---1.001.00--1.00--1.00----1.00--------1.00---1.00---1.00----------------1.001.00-1.00-----------1.00-1.00-------1.00------1.00--------1.00-1.00-----------1.00-------1.00---------
..................................................GTGAGGGGCGGTGGGGGGAGGCCCAGGGCACCCTCAGAGCTCTGGGGGGAGAAATGGAGACCTGAGCATCCCTGCTGCCCCCTAG..................................................85122.0022.00-9.00--12.00--------------------------------------------------------------------------------------------------------------------------------------------------------1.00-----
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTA................................................23114.0052.00--1.00--2.00----------------------1.00----1.001.00----1.00---------1.00-1.00-----------------------------------1.00------1.00--------------1.00----------------------1.00---------------------------1.00--
..................................................................................................................AGCATCCCTGCTGCCCCCTAGAA................................................2319.009.00------------------------1.00-1.00-1.00-1.00-----------1.00--------------2.00----------------------------------1.00-----------------------------------------------------------1.00----------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGAT................................................2318.0093.001.00-----------------1.002.00-----------------------------1.00-----------------------1.00--------1.00---------------------------1.00----------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGC.................................................2215.0052.00--1.00--------------------------------------------1.00----------------------------------------------------------------------------1.00---------1.001.00---------------------------
................GTATGAGCCGCTGCAGAAGTT....................................................................................................................................................2114.004.00--------------------------------------3.00--1.00-------------------------------------------------------------------------------------------------------------------------
................GTATGAGCCGCTGCAGAAGTTT...................................................................................................................................................2214.004.00-----------1.00----------------1.00-----------------------------------1.00------------------------------------------------1.00-------------------------------------------------
...................................................TGAGGGGCGGTGGGGGGAGGCCCAGGGCACCCTCAGAGCTCTGGGGGGAGAAATGGAGACCTGAGCATCCCTGCTGCCCCCTAG..................................................8414.004.00-4.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTT................................................2314.0052.00-----1.00----------1.00------------------------------------------------------------------------------1.00-----------------------------------------------------1.00-------------
..................................................................................................................AGCATCCCTGCTGCCCCCTA...................................................2014.004.001.00-------1.00-----------------------------------------------------------1.00------------------------------------------------------1.00---------------------------------------
..................................................GTGAGGGGCGGTGGGGGGAGGCCCAGGGCACCCTCAGAGCTCTGGGGGGAGAAATGGAGACCTGAGCATCCCTGCTGCCCCCTAGT.................................................8613.0022.00-3.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................GCATCCCTGCTGCCCCCTAGT.................................................213.000.00----------------------------------------------------------2.00-----------------------------------------------------------------------------------1.00--------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTAA...............................................2413.0052.00--2.00-----1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTTT...............................................2412.0052.00-----------------------------------------------------------------------------------------------------------------------------------------1.00--------1.00----------------
..................................................................................................................AGCATCCCTGCTGCCCCC.....................................................1812.002.00----------------------------------------2.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGAAA...............................................2412.009.00---------2.00---------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTCGT.................................................222.000.00---------------------------------------------------------------------------------1.00------1.00--------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTAT...............................................2412.0052.00--------------------------------------------1.00--------1.00-------------------------------------------------------------------------------------------------------------
................GTATGAGCCGCTGCAGAAGT.....................................................................................................................................................2012.002.00---------------------------------2.00---------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAT..................................................2112.004.00--------------------------1.00---------1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................TCAGAGCTCTGGGGGGCCAG..................................................................................201.000.00------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGAAGA..............................................2511.009.001.00------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTCGAT................................................231.000.00------------------------------------------------------------------------------------------------------------------------------------------------------1.00------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGG.................................................2211.0052.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTCTA.................................................221.000.00----------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCGGTGGGGGGCGGA.................................................................................................................191.000.00------------------------------------------------------------------------------------------------1.00------------------------------------------------------------------
................GTATGAGCCGCTGCAGCAGT.....................................................................................................................................................201.000.00--------------------------------------------------------------------------------------------------------------------------------1.00----------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCAAAA..................................................211.000.00--------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTATT..............................................2511.0052.00----------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGCAA...............................................2411.0052.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................TGGGGGGAGAAATGGAGTTTG........................................................................211.000.00-----------------------------------------------------------------------------------------------------------------------------------------------------------1.00-------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGAAT...............................................2411.009.00--------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGACA...............................................2411.0093.00---------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................TGAGCATCCCTGCTGCCCCT.....................................................201.000.00----------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................GCATCCCTGCTGCCCCCTAGTGT...............................................231.000.00--------------------------------------------------------------------------1.00----------------------------------------------------------------------------------------
...................................................................................................................................................................CTGGGATGCTGGAGCCG.....1711.001.00---------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTTA...............................................2411.0052.00--------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCGGTGGGGGCTT...................................................................................................................181.000.00------------------------------------------------------------------------------------------------------------------------------------------------------------1.00------
...................................................................................................................GCATCCCTGCTGCCCCCTAGTA................................................221.000.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------1.00-
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTAAT..............................................2511.0052.00---------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTAGA..............................................2511.0052.00--------------------------------------------------------------------------------------------------------------------------------------------------------------1.00----
........................................................................................................................................ACTTCTCCAGCCCTCTGTG..............................191.000.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................GAGACCTGAGCATCCCTGCTGCCCCCT....................................................2711.001.00------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------
................GTATGAGCCGCTGCAGAAGTTA...................................................................................................................................................2211.004.00-------------------------------------------------------------------------------------1.00-----------------------------------------------------------------------------
.................TATGAGCCGCTGCAGAAGTTTCT.................................................................................................................................................2311.001.00-------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTATT.................................................2211.004.00------------------------------------------------------------------------------------------------------------1.00------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTATA.................................................2211.004.00----------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTG................................................2311.0052.00-----------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
................GTATGAGCCGCTGCAGA........................................................................................................................................................1711.001.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCCTAGTAG...............................................2411.0052.00-------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGCATCCCTGCTGCCCCTTAG..................................................211.000.00----------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
...............GGTATGAGCCGCTGCAGAAGTTTCTG................................................................................................................................................2611.001.00----------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------
.................................AGTTTCTGCTGCTGAAG.......................................................................................................................................1750.200.20---------------------------0.20---------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
TGCTCCTGCTGCAGTGGTATGAGCCGCTGCAGAAGTTTCTGCTGCTGAAGGTGAGGGGCGGTGGGGGGAGGCCCAGGGCACCCTCAGAGCTCTGGGGGGAGAAATGGAGACCTGAGCATCCCTGCTGCCCCCTAGAACTTCTCCAGCCCTCTGCCCAGCCCAGCTGGGATGCTGGAGCCGCTGGT
......................................................(((((((..((((...((.((((...(((((((....)))))))............)))).)).))))..)))))))......................................................
..................................................51..................................................................................135................................................
SizePerfect hitTotal NormPerfect NormSRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029128(GSM416757)
H520. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM956925Ago2D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR029124(GSM416753)
HeLa. (hela)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040039(GSM532924)
G531T. (cervix)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR191529(GSM715639)
131genomic small RNA (size selected RNA from . (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR040006(GSM532891)
G601N. (cervix)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191520(GSM715630)
89genomic small RNA (size selected RNA from t. (breast)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029127(GSM416756)
A549. (cell line)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191508(GSM715618)
152genomic small RNA (size selected RNA from . (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		DRR001483(DRX001037)
Hela long cytoplasmic cell fraction, control. (hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015447(SRR015447)
nuclear small RNAs. (breast)
..................................................GTGAGGGGCGGTGGGGACGT................................................................................................................... 202.000.00------------------------------------------------------------------------1.00----------------------------1.00-------------------------------------------------------------
.......................................................................CCCAGGGCACCCTCATG................................................................................................. 171.000.00------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------
.....................................................AGGGGCGGTGGGGGGAGTGC................................................................................................................ 201.000.00----------------------------------------------------------------------------------------------------------1.00--------------------------------------------------------
.......GCTGCAGTGGTATGACTCG............................................................................................................................................................... 191.000.00-----------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...............................GAAGTTTCTGCTGCTGAGAGA..................................................................................................................................... 211.000.00----------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................ATCCCTGCTGCCCCCTTCTG................................................ 201.000.00---------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCGGTGGGGACG.................................................................................................................... 191.000.00------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................CTCTGCCCAGCCCAGCT.................... 1770.290.29--------------------0.29----------------------------------------------------------------------------------------------------------------------------------------------