ID: uc001nzb.2
GENE: PLCB3(2)
chr11:64022239-64022419+


(1)
AGO1.ip 		(1)
AGO2.ip 		(2)
BRAIN 		(6)
BREAST 		(21)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(1)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCAGTTCCATCAGGGACACACGGACAGGCCGGTACGCCCGCCTGCCCAAGGTGAGTGATGAGCCTGGGAGTGAAGACCACAGCGAGGCTGTGCGGGAGCCCCCTCTTCACCCTTCGCTGTCACCTACTCAGGACCCCAAGATCCGGGAAGTTCTGGGCTTTGGGGGTCCCGATGCCCGGCT
..................................................(((.(((((.(((..(((.((((((..((((((...)))))).(((....))).)))))))))..)))))))).)))......................................................
..................................................51..............................................................................131................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189783SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189784SRR189786SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189785SRR038862(GSM458545)
MM472. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040036(GSM532921)
G243N. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................ACCCTTCGCTGTCACCTACTCA...................................................22140.0040.0032.00---------2.00-2.001.00--------1.00-----1.00---------------------------1.00--
............................................................................................................ACCCTTCGCTGTCACCTACTCT...................................................22118.005.0015.00-----------------2.00-----------------------------1.00----------
..................................................GTGAGTGATGAGCCTGGGAGTGA............................................................................................................23115.0015.00--1.004.00----2.00--3.00--1.00--2.00-1.00------1.00--------------------------------
...................................................TGAGTGATGAGCCTGGGAGTGAAGACCACAGCGAGGCTGTGCGGGAGCCCCCTCTTCACCCTTCGCTGT.............................................................69111.0011.00-11.00---------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAG...............................................................................................................20110.0010.002.00---1.002.003.00---------1.00--------------------------------1.00---------
............................................................................................................ACCCTTCGCTGTCACCTACTCAG..................................................2316.006.005.00--------------------------------1.00-------------------------
..................................................GTGAGTGATGAGCCTGGGAGT..............................................................................................................2116.006.00--1.00--2.00-1.00--------1.00-------------1.00----------------------------
............................................................................................................ACCCTTCGCTGTCACCTACT.....................................................2015.005.001.00-1.00--1.00-------------------------1.001.00--------------------------
............................................................................................................ACCCTTCGCTGTCACCTACTC....................................................2115.005.003.00-----------1.00-1.00--------------------------------------------
...................................................TGAGTGATGAGCCTGGGAG...............................................................................................................1914.004.00--3.00-1.00------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGACCACAGCGAGGCTGTGCGGGAGCCCCCTCTTCACCCTTCGCTGTCACCTACTCAG..................................................8113.003.00-3.00---------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGA..............................................................................................................2113.0010.00--2.00----1.00---------------------------------------------------
...................................................TGAGTGATGAGCCTGGGAGT..............................................................................................................2013.003.00--1.00-----1.00------------------1.00-------------------------------
............................................................................................................ACCCTTCGCTGTCACCTACTCC...................................................2213.005.002.00---------1.00------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAA...........................................................................................................2413.003.00---2.00-------------------------1.00-----------------------------
..................................................GTGAGTGATGAGCCTGGGA................................................................................................................1912.002.00--1.00--1.00-----------------------------------------------------
..................................................GTGAGTGATGAGCCTGAAAC...............................................................................................................202.000.00---------2.00-------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAAG..............................................................................................................2112.002.00---------2.00-------------------------------------------------
........ATCAGGGACACACGGACAGGCCGGCACG.................................................................................................................................................282.000.00---------------2.00-------------------------------------------
...........AGGGACACACGGACAGGC........................................................................................................................................................1812.002.00--1.00--------------------------------------------------1.00-----
..................................................GTGAGTGATGAGCCTGGGAGTGAAGACC.......................................................................................................2812.002.00-------1.00-----------------------------1.00---------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGA.........................................................................................................2612.002.00-------------------1.00--------------------------------1.00------
..................................................GTGAGTGATGAGCCTGGGAGTGAT...........................................................................................................2412.0015.00----1.00------------------------------------1.00-----------------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGAC........................................................................................................2712.002.00----------------------------------------1.00--1.00---------------
.........TCAGGGACACACGGACAGGC........................................................................................................................................................2012.002.00--------------------1.00-------------1.00------------------------
...................................................TGAGTGATGAGCCTGGGAGTGTAA..........................................................................................................2412.001.00------2.00----------------------------------------------------
..................................................GTGAGTGATGAGCCTGAAA................................................................................................................191.000.00------------------------1.00----------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTA.............................................................................................................2211.006.00--------------------1.00--------------------------------------
.................................................................................................................................................GGAAGTTCTGGGCTTTGGG.................1911.001.00------------------------------------1.00----------------------
.....................................................AGTGATGAGCCTGGGAGTGAAGA.........................................................................................................2311.001.00----1.00------------------------------------------------------
...............................................................................................GAGCCCCCTCTTCACCCTTTTA................................................................221.000.00------------------------------------------------------1.00----
............................................................................................................ACCCTTCGCTGTCACCACTC.....................................................201.000.00-------------1.00---------------------------------------------
...............................................................CTGGGAGTGAAGACCGAC....................................................................................................181.000.00--------------------------------------------1.00--------------
..................................................GTGAGTGATGAGCCTGGGAGTG.............................................................................................................2211.001.00--------1.00--------------------------------------------------
............GGGACACACGGACAGGC........................................................................................................................................................1711.001.00---------------------1.00-------------------------------------
........ATCAGGGACACACGGACAGGCC.......................................................................................................................................................2211.001.00--------------------------------------1.00--------------------
...................................................TGAGTGATGAGCCTGGGAGTGA............................................................................................................2211.001.00----------------------1.00------------------------------------
............................................................................................................ACCCTTCGCTGTCACCTACTCAGT.................................................2411.006.00------------------------------------------1.00----------------
............GGGACACACGGACAGGAC.......................................................................................................................................................181.000.00-----------------------------------------------1.00-----------
...........AGGGACACACGGACAGG.........................................................................................................................................................1711.001.00---------------------------------------------1.00-------------
..................................................GTGAGTGATGAGCCTGGG.................................................................................................................1811.001.00--1.00--------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGAAGACCA......................................................................................................2911.001.00---------------------------------------------------1.00-------
.......CATCAGGGACACACGGACAGGCCG......................................................................................................................................................2411.001.00---------------------------------------1.00-------------------
............GGGACACACGGACAGGCCG......................................................................................................................................................1911.001.00-------------------------1.00---------------------------------
.........................................................................................................TTCACCCTTCGCTGTCACCTAA......................................................221.000.00-------1.00---------------------------------------------------
............................................................................................................ACCCTTCGCTGTCACCTACCCT...................................................221.000.00-------------1.00---------------------------------------------
...................................................TGAGTGATGAGCCTGGGAGTG.............................................................................................................2111.001.00----1.00------------------------------------------------------
...................................................TGAGTGATGAGCCTGGGAGTGAAG..........................................................................................................2411.001.00--1.00--------------------------------------------------------
..........................................................................................TGCGGGAGCCCCCTCCAA.........................................................................181.000.001.00----------------------------------------------------------
........ATCAGGGACACACGGACAG..........................................................................................................................................................1911.001.00---------------------1.00-------------------------------------
...................................................TGAGTGATGAGCCTGGGAGTGAAGACCAC.....................................................................................................2911.001.00----1.00------------------------------------------------------
..................................................GTGAGTGATGAGCCTGGGAGTGATAT.........................................................................................................2611.0015.00---1.00-------------------------------------------------------
..................................................................................................................................................GAAGTTCTGGGCTTTG...................1650.200.20----------------------------------------------------------0.20
..................CACGGACAGGCCG......................................................................................................................................................1350.200.20---------------------------------------------------------0.20-

Antisense strand
TCAGTTCCATCAGGGACACACGGACAGGCCGGTACGCCCGCCTGCCCAAGGTGAGTGATGAGCCTGGGAGTGAAGACCACAGCGAGGCTGTGCGGGAGCCCCCTCTTCACCCTTCGCTGTCACCTACTCAGGACCCCAAGATCCGGGAAGTTCTGGGCTTTGGGGGTCCCGATGCCCGGCT
..................................................(((.(((((.(((..(((.((((((..((((((...)))))).(((....))).)))))))))..)))))))).)))......................................................
..................................................51..............................................................................131................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189783SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189784SRR189786SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189785SRR038862(GSM458545)
MM472. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040036(GSM532921)
G243N. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................TTCACCCTTCGCTGTCA........................................................... 1711.001.00-----------------------------------1.00-----------------------
...........AGGGACACACGGACAAT......................................................................................................................................................... 171.000.00--------------------------------------------------1.00--------
............................................................................................................................................................GCTTTGGGGGTCCCGATGAGCT... 221.000.00-----------------------1.00-----------------------------------
....................................................................................................................................................AGTTCTGGGCTTTGGGCTG.............. 191.000.00----------------------------------------------1.00------------