ID: uc001neq.2
GENE: MADD(2)
chr11:47297250-47297499+


(1)
AGO1.ip 		(3)
AGO2.ip 		(4)
B-CELL 		(7)
BRAIN 		(10)
BREAST 		(21)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(3)
HELA 		(2)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGTCTTACCCAGTATATATCTTTACATTTGCTTTTGCCATTGTATATACTTTCCGGTCCTATCTGAGCTCAGAGACTGGGCTTTCTTAATGATGCTCCGTTTCCCATTGTCATCATTAGAGCCTCTGTGGTGATACTGAGTTGCAGTAGGGTATCAGCTTCTGATGCTAATGTGTCTGATTCCTGCTGTCTGCTTCTCAGGGACACCATGTGGCGGATCTTTACTGGATCGCTGCTGGTAGAGGAGAAGT
.................................................................................................................................(((...(((((..(((((((((.((((......(((((....))))))))))))))))))......)))))...)))............................................
................................................................................................................................129..........................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577739(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577741(Rovira)
total RNA. (breast)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR189786SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191498(GSM715608)
3genomic small RNA (size selected RNA from to. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)
.....................................................................................................................................TACTGAGTTGCAGTAGGGTAT................................................................................................21116.0016.001.002.00-1.001.001.00----2.00----1.00-2.00--1.00-1.00-----------1.00---------------------1.00---------1.00-----
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATC...............................................................................................22114.0014.00--4.00-1.001.00----1.00-1.00-1.00------1.00---------------1.00-1.00--------1.00------1.00----------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGCT...........................................................................................23110.0010.00---1.00-------1.00--1.00--------------1.00---1.00---------1.00-1.00--------1.00-------1.00----1.00----
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCTCAGA.................................................2314.001.004.00-----------------------------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCA..............................................................................................2314.004.00-1.00---------1.00---------------1.00------------------------------------1.00-------
........................................................................................................................................TGAGTTGCAGTAGGGTATCA..............................................................................................2014.004.001.00-----------------2.00-----------1.00-----------------------------------------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCTCAGTT................................................2414.001.002.00----------------------1.00--1.00---------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTAA................................................................................................2113.001.00-----1.00---------1.00------1.00-------------------------------------------------
.................................................................................................................................................................................................................................GGATCGCTGCTGGTAGAGGAGA...2213.003.00---------1.00------2.00-------------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCAG.............................................................................................2413.003.00------3.00-----------------------------------------------------------------
..............................................................................................................................................................................................................................ACTGGATCGCTGCTGGTAGAGGAG....2413.003.00------------------------1.00-------1.00--------------------------1.00------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCT..............................................................................................2312.0014.00--------------------------------------1.00-----1.00---------------------------
......................................................................................................................................ACTGAGTTGCAGTAGGGTATCAGCTTCT........................................................................................2812.002.00-2.00----------------------------------------------------------------------
.......................................................................................................................................................................................................................GATCTTTACTGGATCGCTGCTGGTAG.........2612.002.00------------1.00----------------------------------1.00------------------------
......................................................................................................................................ACTGAGTTGCAGTAGGGTATCA..............................................................................................2212.002.00----1.00-------------------------------------1.00-----------------------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGC............................................................................................2212.002.00-------1.00----------------------------1.00-----------------------------------
.........................................................................................................................................................................................................................TCTTTACTGGATCGCTGCTGGTAGA........2512.002.00----------------------------1.00-------------------------------1.00-----------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCAGA............................................................................................2511.003.00-------------------------------1.00----------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGT..................................................................................................1911.001.00-----------------------------------------1.00------------------------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGCTAGC........................................................................................2611.0010.00-----------------------------------------------------1.00------------------
...................................................................................................................................................AGGGTATCAGCTTCTGATGCT..................................................................................2111.001.00---------------------------------------------------------1.00--------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCG..............................................................................................2311.0014.00--------------------1.00---------------------------------------------------
.....................................................................................................................................................................................................................................CGCTGCTGGTAGAGGAGA...1811.001.00---------------------------------------------------1.00--------------------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCTCAG..................................................2211.001.00-------1.00----------------------------------------------------------------
............................................................................................................................................................................................................................TTACTGGATCGCTGCTGGTAGAGGAG....2611.001.00---------------------------------------------------------------1.00--------
.....................................................CGGTCCTATCTGAGCTCAGAGA...............................................................................................................................................................................2211.001.00----------------------------------------1.00-------------------------------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCTCCGTT................................................241.000.00-----------------------1.00------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATA...............................................................................................2211.0016.00-------------------------------------------------------------1.00----------
................................................CTTTCCGGTCCTATCTGAGCTCAGAGAC..............................................................................................................................................................................2811.001.00-------------------1.00----------------------------------------------------
.........................................................................................................................................................................................................GACACCATGTGGCGGATCTT.............................2011.001.00-------------------1.00----------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGGAT................................................................................................211.000.00-1.00----------------------------------------------------------------------
......................................................................................................................................ACTGAGTTGCAGTAGGGTAT................................................................................................2011.001.00-------------------------------------------------1.00----------------------
...................................................................................................................................................................................TTCCTGCTGTCTGCTTCTCAGTT................................................231.000.00--------------------------------------------------------------------1.00---
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGCTT..........................................................................................2411.001.00----1.00-------------------------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCTT.............................................................................................2411.0014.00-------------1.00----------------------------------------------------------
..............................................................................................................................................................................................................................ACTGGATCGCTGCTGGTAGAGG......2211.001.00----------------------------------------------------------1.00-------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTA.................................................................................................2011.001.00-------1.00----------------------------------------------------------------
........................................................................................................................................TGAGTTGCAGTAGGGTAGAA..............................................................................................201.000.00-------------------------1.00----------------------------------------------
...........................................................................................................................................GTTGCAGTAGGGTATCGG.............................................................................................181.000.00---------1.00--------------------------------------------------------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGCA...........................................................................................2311.002.00---1.00--------------------------------------------------------------------
...................................................................................................................TTAGAGCCTCTGTGGTGATACTGAGTTGCAGTAGGG...................................................................................................3611.001.00-----------------------------------1.00------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCAGCT...........................................................................................2611.001.00----------------------------------------------1.00-------------------------
................................................................................................................................................................................TGATTCCTGCTGTCTGCTTCT.....................................................2111.001.00-----------------------------------------------------------------1.00------
......................................................................................................................................ACTGAGTTGCAGTAGGGTATCAGCT...........................................................................................2511.001.00--------------------------------------------------1.00---------------------
......................................................................................................................................ACTGAGTTGCAGTAGGGTATCAGCTTTT........................................................................................281.000.00-1.00----------------------------------------------------------------------
................................................................................................................................................................................................................................TGGATCGCTGCTGGTAGAGGAG....2211.001.00---------------------1.00--------------------------------------------------
.......................................................................................................................................CTGAGTTGCAGTAGGGTATCA..............................................................................................2111.001.00---1.00--------------------------------------------------------------------
...............................................................................................................................................................................................................................CTGGATCGCTGCTGGTAGAGG......2111.001.00--------1.00---------------------------------------------------------------
....................................................................................................................................................................................TCCTGCTGTCTGCTTCTCAGTT................................................221.000.00----------------------------------------------------1.00-------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTAAAG..............................................................................................2311.001.00------------------------1.00-----------------------------------------------
...................................................................................................................................................................................................................................ATCGCTGCTGGTAGAGGAGAAGT2311.001.00-------------1.00----------------------------------------------------------
...............................................................................................................................................................................................................................CTGGATCGCTGCTGGTAGAG.......2011.001.00--------1.00---------------------------------------------------------------
....................................................................................................................................................................................TCCTGCTGTCTGCTTCTCATGA................................................221.000.00-------------------------1.00----------------------------------------------
..........................................................................................................................................................................................................................CTTTACTGGATCGCTGCTGG............2011.001.00--------1.00---------------------------------------------------------------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCT.....................................................1920.500.50---------------------------------------------------------------------0.50--
....................................................................................................................................................................................................................................TCGCTGCTGGTAGA........1440.250.25--------------------------0.25---------------------------------------------
.........CAGTATATATCTTTAC.................................................................................................................................................................................................................................1640.250.25----------------------------------------------------------------------0.25-

Antisense strand
AGTCTTACCCAGTATATATCTTTACATTTGCTTTTGCCATTGTATATACTTTCCGGTCCTATCTGAGCTCAGAGACTGGGCTTTCTTAATGATGCTCCGTTTCCCATTGTCATCATTAGAGCCTCTGTGGTGATACTGAGTTGCAGTAGGGTATCAGCTTCTGATGCTAATGTGTCTGATTCCTGCTGTCTGCTTCTCAGGGACACCATGTGGCGGATCTTTACTGGATCGCTGCTGGTAGAGGAGAAGT
.................................................................................................................................(((...(((((..(((((((((.((((......(((((....))))))))))))))))))......)))))...)))............................................
................................................................................................................................129..........................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577739(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577741(Rovira)
total RNA. (breast)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR189786SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191498(GSM715608)
3genomic small RNA (size selected RNA from to. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)
........................................................................................................................................................ATCAGCTTCTGATGCTTTG............................................................................... 191.000.00---------1.00--------------------------------------------------------------
..........................................................................................GATGCTCCGTTTCC.................................................................................................................................................. 1440.250.25-----------------------------------------------------------------------0.25