ID: uc001kwy.1
GENE: PDCD11(32)
chr10:105202722-105202971+


(1)
AGO1.ip 		(2)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(16)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(3)
HELA 		(3)
LIVER 		(5)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
CTCAGCCATTGGGGTTGGGGCAGGGGTTTCTAATGCTGCAGGAGCTGTGGGGACACAGCCTCTTAGGGTCTACATTTGGGGTGGGATCTGAGGACACAGATAGAGGCTGGGAGGGGGAGGTGGTTCCTGAGTCTGTCTGGATGGGGCGGGAGGCTCACTGGTTTCATGTGGCGCTCATGTGCTGACTGCTCTCCCTCCAGAGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCTCTGCTGAACCTGGAGA
........................................................................................................................................(((((.(((((((..(((.((..(((.((....)).)))..)).)))..))))...))))))))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189783SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR189784SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		GSM956925Paz8D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.....................................................................................................................................TGTCTGGATGGGGCGGGAGGCTCACTGGTTTCATGTGGCGCTCATGTGCTGACTGCTCTCCCTCCA...................................................6617.007.00--7.00-----------------------------------------
.................................................................................................................................................................................TGTGCTGACTGCTCTCCCTCCAGT.................................................2416.004.00-3.00----1.001.00------------------------------1.00-----
...................................................................................................................................................................................TGCTGACTGCTCTCCCTCCAG..................................................2116.006.004.00------1.00------------1.00-----------------------
................................................................................................................................................................................ATGTGCTGACTGCTCTCCCTCCAGA.................................................2514.004.00----3.00---------1.00-----------------------------
.......................................................................................................................................TCTGGATGGGGCGGGAGGCTT..............................................................................................2114.002.00--------2.00--2.00--------------------------------
.................................................................................................................................................................................TGTGCTGACTGCTCTCCCTCCAG..................................................2314.004.002.00---------------------1.00-------------1.00-------
...................................................................................................................................................................................TGCTGACTGCTCTCCCTCCAGT.................................................2214.006.00-3.00-1.00----------------------------------------
.......................................................................................................................................TCTGGATGGGGCGGGAGGCTC..............................................................................................2113.003.00------1.00--------------------1.00-------1.00--------
...................................................................................................................................................................................TGCTGACTGCTCTCCCTCCAGTT................................................2313.006.002.00--1.00----------------------------------------
.................................................................................................................................................................................TGTGCTGACTGCTCTCCCTCCAGAA................................................252.000.00----------------1.001.00--------------------------
.......................................................................................................................................TCTGGATGGGGCGGGAGGCT...............................................................................................2012.002.00---1.00--1.00-------------------------------------
...................................................................................................................................................................................TGCTGACTGCTCTCCCTTCAG..................................................212.000.002.00-------------------------------------------
.................................................................................................AGATAGAGGCTGGGAGACAG.....................................................................................................................................201.000.00---------------------------------1.00----------
......................................................................................................................................GTCTGGATGGGGCGGGAGGCTGAAA...........................................................................................251.000.00---1.00----------------------------------------
..............TTGGGGCAGGGGTTTGTTT.........................................................................................................................................................................................................................191.000.00---------------------1.00----------------------
.................................................................................................................................................................................TGTGCTGACTGCTCTCCCTCC....................................................2111.001.00--------------------------------1.00-----------
..................................................................................................................................................................................................................GAGAAGCTGAACGTGTGGG.....................1911.001.00---------------1.00----------------------------
...................................................................................................................................................................................TGCTGACTGCTCTCCCTCCAGC.................................................2211.006.00------------------------1.00-------------------
...................................................................................................................................................................................TGCTGACTGCTCTCCCTCCAGTTA...............................................2411.006.00-1.00------------------------------------------
......................................................................................................................................................................................................AGAGAGGAGCAGGAGAAGCTGAA.............................2311.001.00------------------------------1.00-------------
.....................................................................................................AGAGGCTGGGAGGGGGAGAC.................................................................................................................................201.000.00-------------1.00------------------------------
.............................................................................................................................................................................................................AGCAGGAGAAGCTGAACGTGTG.......................2211.001.00-------------------------------1.00------------
..............................................................................................................................................................................................................GCAGGAGAAGCTGAAGGA..........................181.000.00-------------------------------------1.00------
..................................................GGACACAGCCTCTTAGGGTCTACATTTGGGG.........................................................................................................................................................................3111.001.00-------------------1.00------------------------
........................................................................................................................................................................................................................CTGAACGTGTGGGTGGCTCTGCTGAACCCG....301.000.00---------1.00----------------------------------
.................................................................................................................................................................................TGTGCTGACTGCTCTCCCTCCATA.................................................241.000.001.00-------------------------------------------
................................................................................................................................................................................ATGTGCTGACTGCTCTCCCTCCAG..................................................2411.001.00-----------------------1.00--------------------
.................................................................................................................................................................................TGTGCTGACTGCTCTCCCTCGAG..................................................2311.001.001.00-------------------------------------------
.......................................................................................................................................TCTGGATGGGGCGGGAGGCTCT.............................................................................................2211.003.00----------1.00---------------------------------
.................................................................................................................................................................................TGTGCTGACTGCTCTCCCTC.....................................................2011.001.00---------------------------------------1.00----
.......................................................................................................................................TCTGGATGGGGCGGGAGGCCC..............................................................................................211.000.00----------------------------1.00---------------
.............................................................................................................................................TGGGGCGGGAGGCTCACTGGTC.......................................................................................221.000.00-----1.00--------------------------------------
............................................................................................................................................................................................................GAGCAGGAGAAGCTGAACGTG.........................2111.001.00----------------------------------1.00---------
......................................................................................................................................GTCTGGATGGGGCGGGAGGCA...............................................................................................211.000.00---1.00----------------------------------------
...................................................................................................................................................................................TGCTGACTGCTCTCCCTCC....................................................1911.001.00-----------------------------1.00--------------
.............................................................................................................GGAGGGGGAGGTGGTGTTA..........................................................................................................................191.000.00------------1.00-------------------------------
.....................................................................................................................................................................................................CAGAGAGGAGCAGGAGAAG..................................1921.001.00-------------------------1.00------------------
..............................................................................................................................................................................................................GCAGGAGAAGCTGAAGTA..........................181.000.00--------------------------1.00-----------------
............................................................................................................................................ATGGGGCGGGAGGCTAGT............................................................................................181.000.00-----1.00--------------------------------------
...................................................................................................................................................................................................TCCAGAGAGGAGCAGGAGAAGCTGA..............................2511.001.00-----1.00--------------------------------------
.................................................................................................................................................................................TGTGCTGACTGCTCTCCCTCAA...................................................2211.001.001.00-------------------------------------------
............................................................................................................................................................ACTGGTTTCATGTGGCGCTCATG.......................................................................2311.001.00----------1.00---------------------------------
.................................................................................................................................................................................................................GGAGAAGCTGAACG...........................1460.500.50-----------------------------------------0.33-0.17
.......................................................................................................................................................................................................GAGAGGAGCAGGAGAAGC.................................1830.330.33----------------------------------------0.33---
........................................................................................................................................................................................................AGAGGAGCAGGAGAAGCT................................1840.250.25----------------------------------------0.25---
..................................................................................................................................GTCTGTCTGGATGGG.........................................................................................................15100.200.20------------------------------------------0.20-

Antisense strand
CTCAGCCATTGGGGTTGGGGCAGGGGTTTCTAATGCTGCAGGAGCTGTGGGGACACAGCCTCTTAGGGTCTACATTTGGGGTGGGATCTGAGGACACAGATAGAGGCTGGGAGGGGGAGGTGGTTCCTGAGTCTGTCTGGATGGGGCGGGAGGCTCACTGGTTTCATGTGGCGCTCATGTGCTGACTGCTCTCCCTCCAGAGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCTCTGCTGAACCTGGAGA
........................................................................................................................................(((((.(((((((..(((.((..(((.((....)).)))..)).)))..))))...))))))))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189783SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR189784SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		GSM956925Paz8D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.....................................................................CTACATTTGGGGTGGGATCTG................................................................................................................................................................ 2111.001.00------------------1.00-------------------------
..........................................................................TTTGGGGTGGGATCTGAGG............................................................................................................................................................. 191.000.00---------1.00----------------------------------