ID: uc001gxo.1
GENE: PTPN7(1)
chr1:202126902-202127295-


(2)
AGO2.ip 		(13)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(5)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
UTERUS

Sense strand
CCCTTCAGCGCCAGCCACCCAGCCCCAAGCAACTGGAAGAAGAATTCTTGGTAAGAAATTGGGGTCCCCTCTGAATCGCTCTGCCCTCTGTATCAGAGGCAGCCAGCTGGAACCATTCTCTCACGGGCACCCTGGGCAAGTCTCCCCTTTGGGCCCCTTAGGAAAGAGAACTTCAGGGCTGAGGGAGGGGCTGCCCCCAGGCTTCCCCTTCTGCCCCCACCCCATCTAGGCCTACATACTATTGTCAAGAAGGAATGGCCAGAGTCCAGCTGTTCTAGAAAAAGGTAGAAGGAGAGAAAAGGAGGCTAGGAGTCAGCTGCTCACCCATTTCCTCCCCCTGCCAGAAGATCCCTTCAAACTTTGTCAGCCCCGAAGACCTGGACATCCCTGGCCA
...........................................................................................................................................................................................................................................................................................(((((..((((.((((.((.(((.((.......)))))...)).))))))))..)))))....................................................
.....................................................................................................................................................................................................................................................................................278...............................................................344................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR189784SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR040023(GSM532908)
G575T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040012(GSM532897)
G648N. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR189783
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGGC........................................................................................24179.0079.0058.00-4.00--1.002.005.002.00--1.001.002.00----------1.00-----------1.00-----1.00------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGG.........................................................................................23136.0036.0025.00-2.00--1.001.00--2.00--1.00--------1.001.00-----------------------1.00----1.00---
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAG..........................................................................................22128.0028.006.00--8.00-3.001.00-2.00-1.002.00---1.00-2.00-------------1.00-----------1.00-----------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGGCT.......................................................................................2518.008.001.00------------1.001.00--------2.001.00-2.00----------------------------
.........................................................................................................................................................................................................................................................................................AAGGTAGAAGGAGAGAAAAGGA...........................................................................................2218.008.00--2.00------2.001.00---1.00------1.00-----------------------1.00---------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGA...........................................................................................2115.005.00--1.00-----1.001.00----1.00---------------------------------1.00------
.........................................................................................................................................................................................................................................................................................AAGGTAGAAGGAGAGAAAAGG............................................................................................2113.003.00--1.00-------------------1.00----------1.00---------------------
..................................................................................................................................................................................................................................................................................................................TAGGAGTCAGCTGCTCACCCATTTCCTCCCCCTGCCAGT.................................................393.000.003.00------------------------------------------------------
.................................................................................................................................................................................................................................................TTGTCAAGAAGGAATGGC.......................................................................................................................................1812.002.00-------------------------2.00-----------------------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGT.........................................................................................2312.0028.00-----2.00-------------------------------------------------
........................................................................................................................................................................................................................................................................................AAAGGTAGAAGGAGAGAAAAGGA...........................................................................................2312.002.001.00---------------1.00--------------------------------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAG.............................................................................................1912.002.00----------1.00--------------------------1.00-----------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGA.........................................................................................2312.0028.00------------1.00----1.00-------------------------------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGGCA.......................................................................................2512.0079.00--1.00---------------1.00------------------------------------
...........................AGCAACTGGAAGAAGAATT............................................................................................................................................................................................................................................................................................................................................................1912.002.00----------------2.00--------------------------------------
.......................CCCAAGCAACTGGAAGAAGAATTCTTG........................................................................................................................................................................................................................................................................................................................................................2712.002.00---------------1.00--1.00------------------------------------
..............................................................................................................................................................................AGGGCTGAGGGAGGGGCGGAA.......................................................................................................................................................................................................211.000.00-------------------1.00-----------------------------------
................................................................................................................................................................................GGCTGAGGGAGGGGCTGGAAT.....................................................................................................................................................................................................211.000.00----------------------------------1.00--------------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGGTTT......................................................................................2611.0036.00--1.00----------------------------------------------------
..............................AACTGGAAGAAGAATGGGT.........................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------------1.00----------------
........................................................................................................................................................................................................................................................................................AAAGGTAGAAGGAGAGAAAAGG............................................................................................2211.001.00-----------------------------------------------------1.00-
......................CCCCAAGCAACTGGAAGAAGAATTCTTG........................................................................................................................................................................................................................................................................................................................................................2811.001.00---------------1.00---------------------------------------
..........................AAGCAACTGGAAGAAGAATTCT..........................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------1.00----------------------------------
.........................................................................................................................................................................................................................................................................................AAGGTAGAAGGAGAGATA...............................................................................................181.000.00-------------------------------------------------1.00-----
..............................................................................................................................................................................................................................................................................................AGAAGGAGAGAAAAGGAATC........................................................................................201.000.00----------------------------------------1.00--------------
...................................................................................................................................................................................................................................................................................................................................CCCATTTCCTCCCCCTTC.....................................................181.000.00----1.00--------------------------------------------------
................................................................................................................................................................................GGCTGAGGGAGGGGCTGTCA......................................................................................................................................................................................................201.000.00-----------------------------------------1.00-------------
............................GCAACTGGAAGAAGAATTCTTGG.......................................................................................................................................................................................................................................................................................................................................................2311.001.00-------1.00-----------------------------------------------
..............................AACTGGAAGAAGAATTT...........................................................................................................................................................................................................................................................................................................................................................171.000.00---------------------------------------1.00---------------
................................................................................................................................................................................................................................................................................................................................................................................CCCGAAGACCTGGACATCCCT.....2111.001.00----------------------------1.00--------------------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGGA........................................................................................2411.0036.001.00------------------------------------------------------
.........................................................................................................................................................................................................................................................................................AAGGTAGAAGGAGAGAAAAGGAGGCTT......................................................................................271.000.00------1.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGGCTTT.....................................................................................2711.008.00------1.00------------------------------------------------
............................GCAACTGGAAGAAGAATTC...........................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------1.00----------------------------------
..............................AACTGGAAGAAGAATGGGC.........................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------1.00----------------------
............................GCAACTGGAAGAAGAATT............................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGGCTAA.....................................................................................271.000.00----------1.00--------------------------------------------
........................................................................................................................................................................................................................................................................................AAAGGTAGAAGGAGAGAAAAGGAGGCT.......................................................................................2711.001.00---------------------------1.00---------------------------
..........................................................................................................................................................................................................................................................................................AGGTAGAAGGAGAGAAAAGGAGGCAAT.....................................................................................2711.0079.00-----------1.00-------------------------------------------
.........................................................................................................................................................................................................................................................................................AAGGTAGAAGGAGAGAAAA..............................................................................................1920.500.50----------0.50--------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................ACCTGGACATCCCTGG...1620.500.50------0.50------------------------------------------------

Antisense strand
CCCTTCAGCGCCAGCCACCCAGCCCCAAGCAACTGGAAGAAGAATTCTTGGTAAGAAATTGGGGTCCCCTCTGAATCGCTCTGCCCTCTGTATCAGAGGCAGCCAGCTGGAACCATTCTCTCACGGGCACCCTGGGCAAGTCTCCCCTTTGGGCCCCTTAGGAAAGAGAACTTCAGGGCTGAGGGAGGGGCTGCCCCCAGGCTTCCCCTTCTGCCCCCACCCCATCTAGGCCTACATACTATTGTCAAGAAGGAATGGCCAGAGTCCAGCTGTTCTAGAAAAAGGTAGAAGGAGAGAAAAGGAGGCTAGGAGTCAGCTGCTCACCCATTTCCTCCCCCTGCCAGAAGATCCCTTCAAACTTTGTCAGCCCCGAAGACCTGGACATCCCTGGCCA
...........................................................................................................................................................................................................................................................................................(((((..((((.((((.((.(((.((.......)))))...)).))))))))..)))))....................................................
.....................................................................................................................................................................................................................................................................................278...............................................................344................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR189784SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR040023(GSM532908)
G575T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040012(GSM532897)
G648N. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR189783
....................................AAGAAGAATTCTTGGTTG.................................................................................................................................................................................................................................................................................................................................................... 1818.000.00-17.00--1.00--------------------------------------------------
....................................AAGAAGAATTCTTGGTGG.................................................................................................................................................................................................................................................................................................................................................... 182.000.00----1.00-------------------------------------------------1.00
....................................AAGAAGAATTCTTGGTAG.................................................................................................................................................................................................................................................................................................................................................... 182.000.00-2.00-----------------------------------------------------
.................................................................................................................................................................................................................................................................GCCAGAGTCCAGCTGATC....................................................................................................................... 182.000.00-----------------------------1.00--------------1.00----------
.........................................................................................................................................................................................................................................................................................................................................................AGATCCCTTCAAACTTGA............................... 182.000.00------------------------------1.00----------------1.00-------
....................................AAGAAGAATTCTTGGTCG.................................................................................................................................................................................................................................................................................................................................................... 182.000.00-2.00-----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................GAGGCTAGGAGTCAGCATAT......................................................................... 201.000.00----1.00--------------------------------------------------
.................................................................................................................................................................................................CCCCCAGGCTTCCCCTA........................................................................................................................................................................................ 171.000.00-----------------------------------1.00-------------------
........................................................................................................................................................................................................................................................................................................................................................AAGATCCCTTCAAACTAA................................ 181.000.00----------------------------------------------------1.00--
............................................................................................................................................................................................................................................................................................................GGAGGCTAGGAGTCAGCATTC......................................................................... 211.000.00----1.00--------------------------------------------------
....................................AAGAAGAATTCTTGGTTTT................................................................................................................................................................................................................................................................................................................................................... 191.000.00-1.00-----------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGCTAGGAGTCAGCAGG.......................................................................... 181.000.00----1.00--------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGCTAGGAGTCAGCAG........................................................................... 171.000.00----1.00--------------------------------------------------
...........................................................................................................................................................................................................TCCCCTTCTGCCCCCCGG............................................................................................................................................................................. 181.000.00--------------------------------------------------1.00----
....................................AAGAAGAATTCTTGGTTT.................................................................................................................................................................................................................................................................................................................................................... 181.000.00-1.00-----------------------------------------------------
............................................................................................................................................................................................................CCCCTTCTGCCCCCACC............................................................................................................................................................................. 1760.170.17---------------------------0.17---------------------------