ID: uc001gvr.17
GENE: KIF21B(17)
chr1:200960804-200961053-


(1)
AGO1.ip
(2)
AGO2.ip
(6)
B-CELL
(15)
BRAIN
(6)
BREAST
(18)
CELL-LINE
(1)
CERVIX
(1)
HEART
(4)
LIVER
(2)
OTHER
(6)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
TGCCCTTGTGGAGAAAGCAGTTTTCACTGCAACCTCTGGGGAGGGGAGCTCAACCCTGGGTCCCACTTTATCAAGAGTTTGGCTGCATGAGAATCACCCTGAAGCCCAGGCTTTCAACTACAGGGCTAGCCAGCCTGTACACAGACAGAGAGGGCTAAGGTGCCTGAGTGTGGAGCCCAGCCCTCTTCTGTCTCCCACAGTTTCAGATCCGAGCTCTGGAGTCCCAGAAGCGGCAGCAGGAGATGGTCCT
......................................................................................................................................((((....((((((((((((((..(((.((.......)).))).)))))))).))))))...))))..................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM339996(GSM339996)
hues6Neuron. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
GSM339994(GSM339994)
hues6. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577580(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGT.........................................................................................22122.0022.00-9.00--2.00-2.003.00--2.00---1.001.00-------------------------1.00----------------1.00---
............................................................................................................................................ACAGACAGAGAGGGCTAAGGT.........................................................................................21117.0017.001.00-7.00--1.002.00--1.00--2.00--1.00---------------1.00-----------------1.00------------
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGTT........................................................................................2319.0022.001.00---1.00---3.00--------1.00---1.00-----------1.00-1.00--------------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGTG........................................................................................2215.005.001.00--1.00-1.00-----------1.00-----1.00--------------------------------------
..........................................................................................................................................ACACAGACAGAGAGGGCTAAGGT.........................................................................................2314.004.001.00--2.00-----1.00----------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTG........................................................................................2114.004.00-----------1.00---------------1.00---------1.00-1.00----------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGTAA.......................................................................................2314.0017.001.00--1.00----1.00-------------------------------------------1.00---------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGTA........................................................................................2213.0017.00--------------1.00---------1.00----------------------1.00--------------
..............................................................................................................................................AGACAGAGAGGGCTAAGGTG........................................................................................2013.003.00-------------2.00----1.00-------------------------------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGA.........................................................................................2112.001.00-----------------------------1.00------1.00-------------------------
...........................................................................................................................................CACAGACAGAGAGGGCTAA............................................................................................1912.002.00---------------------1.00--------------------1.00-------------------
..............................................................................................................................................AGACAGAGAGGGCTAAGGT.........................................................................................1912.002.00-----------1.00------1.00-------------------------------------------
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGTGT.......................................................................................2412.001.00---------------1.00--------------1.00-------------------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGTGT.......................................................................................2312.005.00----1.00-----------1.00---------------------------------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGTT........................................................................................2212.0017.00---------1.00---------1.00------------------------------------------
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGG.........................................................................................222.000.001.001.00------------------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTGCC......................................................................................2312.002.00--------------------------1.00--------------------------1.00--------
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGGT........................................................................................232.000.002.00-------------------------------------------------------------
.............................................................................................................................................................................AGCCCAGCCCTCTTCTGTCT.........................................................2012.002.00----------------------------------------1.00-------------1.00-------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTGA.......................................................................................2211.004.00-------------------------------------------1.00------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGACG........................................................................................221.000.00----1.00---------------------------------------------------------
.............................................................................................................................................................................AGCCCAGCCCTCTTCTGTCTCCTTT....................................................2511.001.00-------------------------1.00------------------------------------
..............................................................................................................................................AGACAGAGAGGGCTAAGGTGTTT.....................................................................................2311.003.00------1.00-------------------------------------------------------
..............................AACCTCTGGGGAGGGCGGG.........................................................................................................................................................................................................191.000.00---------------------------------------------------1.00----------
..........................................................................................................................................ACACAGACAGAGAGGGCTAAGGATA.......................................................................................251.000.00-----1.00--------------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGG..........................................................................................1911.001.00------------------------------------------------1.00-------------
..................................................................................................................................................................................................................GAGCTCTGGAGTCCCAGAAGC...................2111.001.00-------1.00------------------------------------------------------
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGAG........................................................................................231.000.001.00-------------------------------------------------------------
..............................................................................................................................................AGACAGAGAGGGCTAAGGTGCCT.....................................................................................2311.001.00----1.00---------------------------------------------------------
.............................................................................................................................................................................................................GATCCGAGCTCTGGAGTCCCAGAAG....................2511.001.001.00-------------------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTT........................................................................................2111.001.00-----1.00--------------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGT.........................................................................................2011.001.00----------1.00---------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTAGAA.....................................................................................2411.001.00----------------------1.00---------------------------------------
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGTG........................................................................................2311.001.00------------1.00-------------------------------------------------
..........................................................................................................................................ACACAGACAGAGAGGGCTAAGA..........................................................................................221.000.00---1.00----------------------------------------------------------
.............................................................................................................................................................................AGCCCAGCCCTCTTCTGTCTCC.......................................................2211.001.00--------------------------------------------1.00-----------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGAAT........................................................................................221.000.00----------------------1.00---------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTGC.......................................................................................2211.001.00----------------------------1.00---------------------------------
...........................................................................................................................................CACAGACAGAGAGGGCAAAG...........................................................................................201.000.00----------------1.00---------------------------------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGG..........................................................................................2011.001.00-----1.00--------------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTCA.......................................................................................2211.001.00----1.00---------------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTA........................................................................................2111.001.00---1.00----------------------------------------------------------
..........................................................................................................................................ACACAGACAGAGAGGGCTAAGGG.........................................................................................231.000.00---------1.00----------------------------------------------------
................................................................................................................................................................................CCAGCCCTCTTCTGTCTCCCCT....................................................221.000.00-------------------------------------------------------1.00------
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGA.........................................................................................221.000.00-------------------1.00------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTAT.......................................................................................2211.001.00--------------1.00-----------------------------------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGGA........................................................................................2211.001.00---1.00----------------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAGGTGAC......................................................................................2311.004.00----------------------------------------------1.00---------------
...........................................................................................................................................CACAGACAGAGAGGGCTAAGGAGC.......................................................................................241.000.00-----------------------1.00--------------------------------------
...........................................................................................................................................CACAGACAGAGAGGGCTCTGG..........................................................................................211.000.00-----------1.00--------------------------------------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGTAGA......................................................................................2411.0017.00--------------------------------1.00-----------------------------
............................................................................................................................................................................GAGCCCAGCCCTCTTCTGTCTCT.......................................................231.000.00---------------------------------------------------------1.00----
..............................................................................................................................................AGACAGAGAGGGCTAAGGTAG.......................................................................................2111.002.00-------------1.00------------------------------------------------
............................................................................................................................................ACAGACAGAGAGGGCTAAGGTGA.......................................................................................2311.005.00--------------------------------------------------------1.00-----
..........................................................................................................................................ACACAGACAGAGAGGGC...............................................................................................1711.001.00---------------------------------------------1.00----------------
.........................................................................................................................................TACACAGACAGAGAGGGCTAAGGTAT.......................................................................................261.000.00-----1.00--------------------------------------------------------
............................................................................................................................................ACAGACAGAGAGGGCTA.............................................................................................1720.500.50----------0.50---------------------------------------------------
.............................................................................................................................................CAGACAGAGAGGGCTAAG...........................................................................................1820.500.50-----------------------------------------------------------0.50--

Antisense strand
TGCCCTTGTGGAGAAAGCAGTTTTCACTGCAACCTCTGGGGAGGGGAGCTCAACCCTGGGTCCCACTTTATCAAGAGTTTGGCTGCATGAGAATCACCCTGAAGCCCAGGCTTTCAACTACAGGGCTAGCCAGCCTGTACACAGACAGAGAGGGCTAAGGTGCCTGAGTGTGGAGCCCAGCCCTCTTCTGTCTCCCACAGTTTCAGATCCGAGCTCTGGAGTCCCAGAAGCGGCAGCAGGAGATGGTCCT
......................................................................................................................................((((....((((((((((((((..(((.((.......)).))).)))))))).))))))...))))..................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM339996(GSM339996)
hues6Neuron. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
GSM339994(GSM339994)
hues6. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577580(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
......................................................................................................................................................................................................AGTTTCAGATCCGAGCTG.................................. 182.000.00--------------------2.00-----------------------------------------
..................................................................................................................CAACTACAGGGCTAGCCGAGG................................................................................................................... 211.000.00----------------------------------1.00---------------------------
........................................................................................................CCCAGGCTTTCAACTACGA............................................................................................................................... 191.000.00--------------------------------------------------1.00-----------
...............................................................................................................................................GACAGAGAGGGCTAAGGTGCCTGAG.................................................................................. 2511.001.00--------------------------------------1.00-----------------------
................................................CTCAACCCTGGGTCCCA......................................................................................................................................................................................... 1720.500.50------------------------------------------------------------0.50-
..............................................................................................................................................................................................TCTCCCACAGTTTCAG............................................ 1650.200.20-------------------------------------------------------------0.20