ID: uc001fxk.4
GENE: ARHGAP30(4)
chr1:161022104-161022279-


(1)
AGO1.ip 		(2)
AGO2.ip 		(8)
B-CELL 		(25)
BREAST 		(17)
CELL-LINE 		(6)
CERVIX 		(3)
LIVER 		(2)
OTHER 		(26)
SKIN

Sense strand
CTCTGGCCATGAGACTAAGCGTAAACTTCCACGGGGGGCTGAGGACAGGGGTAAGTCTGGGGAGATGGGGGGAGCTCTGCTGAGGGTGCACAAGGCCCTGGCTCTACACACATCCCTGTCTTACAGAGGATAAATCCAACAAGGGGACACTGCGGCCAGCCAAAAGCATGGACTCA
..................................................(((((...(((((..((...((((((......(((((.......)))))))))))...))..)))))..)))))....................................................
..................................................51.........................................................................126................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR343335SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR343334SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577745(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)		SRR189782TAX577738(Rovira)
total RNA. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		TAX577743(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR191525(GSM715635)
121genomic small RNA (size selected RNA from . (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................TACACACATCCCTGTCTTACAGT.................................................231129.0061.0069.005.001.001.001.004.001.00---1.002.002.003.001.001.00-1.002.00-1.00-2.001.001.002.001.001.00------2.00-1.00--1.00-1.00-1.001.001.00-1.001.00--1.00-1.00-1.00---1.001.00--1.001.001.00--1.00-1.001.00--1.001.001.00---1.00----------
........................................................................................................TACACACATCCCTGTCTTACAG..................................................22161.0061.0027.004.007.001.001.00-5.003.00--1.00-1.00-------1.002.00--1.00--1.00---1.002.00--1.001.00---------------1.00--------------------------------------
........................................................................................................TACACACATCCCTGTCTTACA...................................................21131.0031.00-5.00-5.002.001.00-1.00-2.001.001.00--1.00---1.002.00---------1.00--------1.00----------1.001.00---1.00-----------1.00-----1.001.00---1.00-------------
........................................................................................................TACACACATCCCTGTCTTACAGA.................................................23118.0018.007.003.00--1.001.00-1.00------1.001.00-------1.00-----------1.00---------------------1.00---------------------------------
........................................................................................................TACACACATCCCTGTCTTAC....................................................20117.0017.007.00--------2.00------2.00--1.00--------1.001.00----------------------------1.00----------1.00--------1.00------------
........................................................................................................TACACACATCCCTGTCTTA.....................................................1917.007.00---1.00------1.00-----1.00--------------1.00--------1.00-----1.00--------------------1.00-----------------------
........................................................................................................TACACACATCCCTGTCTTACAGC.................................................2315.0061.004.00--------------1.00---------------------------------------------------------------------------
.........................................................................................................ACACACATCCCTGTCTTACAGT.................................................225.000.005.00------------------------------------------------------------------------------------------
.............................CACGGGGGGCTGAGGACAGGG..............................................................................................................................2112.002.00---------------------------------2.00---------------------------------------------------------
.......................................................................................................CTACACACATCCCTGTCTTACAGT.................................................242.000.002.00------------------------------------------------------------------------------------------
..........................................................................................................CACACATCCCTGTCTTACAGT.................................................212.000.001.00------------------------------------------------------------1.00-----------------------------
.................................GGGGGCTGAGGACAGGG..............................................................................................................................17101.601.60----0.20---------------------------------0.10------------------------------------------0.70--0.100.100.10-0.100.100.10
.........................................................................................................................................AACAAGGGGACACTGCGGCC...................2011.001.00-----------1.00-------------------------------------------------------------------------------
...........................TCCACGGGGGGCTGAGGACAGGGAGGA..........................................................................................................................271.000.00-------------------------------------1.00-----------------------------------------------------
.........................................................................................................................................AACAAGGGGACACTGCGG.....................1811.001.00--------------------------------------------------------1.00----------------------------------
...............................CGGGGGGCTGAGGACTCTG..............................................................................................................................191.000.00------------------------------------------1.00------------------------------------------------
.............................................................................................................................................AGGGGACACTGCGGCGGT.................181.000.00----1.00--------------------------------------------------------------------------------------
.....................................GCTGAGGACAGGGGTAA..........................................................................................................................1711.001.00----------------------------1.00--------------------------------------------------------------
........................................................................................................TACACACATCCCTGTCTTATA...................................................2111.007.00--------1.00----------------------------------------------------------------------------------
.....GCCATGAGACTAAGCGTAAACTTCCA.................................................................................................................................................2611.001.00-----------------1.00-------------------------------------------------------------------------
...TGGCCATGAGACTAAATTT..........................................................................................................................................................191.000.00-----1.00-------------------------------------------------------------------------------------
......................................................................................................................................TCCAACAAGGGGACACTGCG......................2011.001.00--------------------1.00----------------------------------------------------------------------
.......................................................TCTGGGGAGATGGGGGGAGCTCTG.................................................................................................2411.001.00-------------------------------------------------------------------------------1.00-----------
.......................................................................................................................................................GCGGCCAGCCAAAAGCATGGACT..2311.001.00-----------------1.00-------------------------------------------------------------------------
........................................................................................................TACACACATCCCTGTCTACAG...................................................211.000.00--1.00----------------------------------------------------------------------------------------
.........................................................................................................ACACACATCCCTGTCTTCCA...................................................201.000.00--------------------------1.00----------------------------------------------------------------
..................................................GTAAGTCTGGGGAGATGGGGGGAGC.....................................................................................................2511.001.00--------1.00----------------------------------------------------------------------------------
........................................................................................................TACACACATCCCTGTCTTATAGT.................................................2311.007.00----1.00--------------------------------------------------------------------------------------
...................................................TAAGTCTGGGGAGATG.............................................................................................................1620.500.50----------------------------------------------------------------------------------0.50--------
.......................................TGAGGACAGGGGTAAG.........................................................................................................................1650.200.20-----------------------------------------------------------------------------------0.20-------
.................................GGGGGCTGAGGACAGGGAGG...........................................................................................................................20100.101.60-------------------------------------0.10-----------------------------------------------------
.................................GGGGGCTGAGGACAGGGAGGA..........................................................................................................................21100.101.60---------------------------------------------------------------------------------------0.10---

Antisense strand
CTCTGGCCATGAGACTAAGCGTAAACTTCCACGGGGGGCTGAGGACAGGGGTAAGTCTGGGGAGATGGGGGGAGCTCTGCTGAGGGTGCACAAGGCCCTGGCTCTACACACATCCCTGTCTTACAGAGGATAAATCCAACAAGGGGACACTGCGGCCAGCCAAAAGCATGGACTCA
..................................................(((((...(((((..((...((((((......(((((.......)))))))))))...))..)))))..)))))....................................................
..................................................51.........................................................................126................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR343335SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR343334SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577745(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)		SRR189782TAX577738(Rovira)
total RNA. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		TAX577743(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR191525(GSM715635)
121genomic small RNA (size selected RNA from . (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................CTCTACACACATCCCTAA......................................................... 182.000.00--------2.00----------------------------------------------------------------------------------
......................................CTGAGGACAGGGGTAAGTCTACGC.................................................................................................................. 242.000.00------------------------------2.00------------------------------------------------------------
...............................................................................................CCCTGGCTCTACACACATCCCTGTCT....................................................... 2611.001.00--------------------------------------------------------------1.00----------------------------
..............................................................................................GCCCTGGCTCTACACATG................................................................ 181.000.00--------1.00----------------------------------------------------------------------------------