ID: uc001epm.3
GENE: CHD1L(21)
chr1:146766912-146767161+


(1)
AGO2.ip
(1)
BREAST
(10)
CELL-LINE
(2)
CERVIX
(1)
HELA
(1)
LIVER
(5)
OTHER
(12)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CGAGCAGTATCTAAAGAGTTTTAGTACTCTGAAAACAACAGCAGCAATAAGTACTAATATTGAAAGTGTTTATGATATCGTGAGAGAATTAAAGCATACTACTTCTAGAACAGTTATTTCAATAATTACTAGAGAACTAGTCGTTTTGGTAAAGTTGGTTTAAAGTGATGACATGTATCTTCCTTGACCATCCTTATCAGATATTATTTTCCTAGAAGCAAGTCTGCTGTCCTTCATGCACAGTCTTCAT
..................................................................................................................................................((((((...(((((......((((.....))))......)))))...))))))...................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR189785SRR037938(GSM510476)
293Red. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
...................................................................................................................................................................................TTCCTTGACCATCCTTATCAG..................................................211105.00105.0079.0022.00----2.00-------1.00--------------1.00---
...................................................................................................................................................................................TTCCTTGACCATCCTTATCAGT.................................................22171.00105.0046.002.007.00---1.00-3.00--2.002.00--1.00-1.00-1.00---1.001.001.00----1.001.00-
...................................................................................................................................................................................TTCCTTGACCATCCTTATCA...................................................2016.006.006.00--------------------------------
...................................................................................................................................................................................TTCCTTGACCATCCTTATCAGA.................................................2216.006.001.00-5.00------------------------------
...........................................................................................................................................GTCGTTTTGGTAAAGTTGGTTTAAAGTGATGACATGTATCTTCCTTGACCATCCTTATCAG..................................................6115.005.00----5.00----------------------------
.................................................................................................................................................TTGGTAAAGTTGGTTTAAAGTGA..................................................................................2314.004.00-----4.00---------------------------
...................................................................................................................................................................................TTCCTTGACCATCCTTATC....................................................1914.004.001.003.00-------------------------------
............................................................................................................................................................................................................TATTTTCCTAGAAGCAAGTCTGTTTG....................263.000.00-------3.00-------------------------
.................................................................................................................................................TTGGTAAAGTTGGTTTAAAGTGAT.................................................................................2412.002.00----------2.00----------------------
....................................................................................................................................................................................TCCTTGACCATCCTTATCAG..................................................2012.002.002.00--------------------------------
................................................................................................................................................................TAAAGTGATGACATGCAG........................................................................182.000.001.00-------------------------1.00------
...........................TCTGAAAACAACAGCAGCAATAAGTAC....................................................................................................................................................................................................2711.001.00---1.00-----------------------------
......................................................................................................................................AACTAGTCGTTTTGGTGCG.................................................................................................191.000.00-------------1.00-------------------
.................................AACAACAGCAGCAATAAGTACTAAT................................................................................................................................................................................................2511.001.00---1.00-----------------------------
...................................................................................................................................................................................TTCCTTGACCATCCTTATCAT..................................................2111.006.001.00--------------------------------
........................................................................................................................................CTAGTCGTTTTGGTAAAGTTGGTTTAAAGTGATGACATGTATCTTCCTTGACCATCCTTATCAG..................................................6411.001.00----1.00----------------------------
.......................................................................................................................................................................................................................AAGCAAGTCTGCTGTCCTTCACTC...........241.000.00----------------1.00----------------
.......................................................................................................................................................................................TTGACCATCCTTATCAGT.................................................181.000.00------------------1.00--------------
..................................................................................................................................................................................CTTCCTTGACCATCCTTATCAG..................................................2211.001.00---------------------------1.00-----
.................................................................................................................................................TTGGTAAAGTTGGTTTAAAGT....................................................................................2111.001.00----------------------------1.00----
...........................................................................................................................................................................CATGTATCTTCCTTGACCATCCTTATCAG..................................................2911.001.00---------1.00-----------------------
...................................................................................................................................................................................TTCCTTGACCATCCTTATCAGG.................................................2211.00105.001.00--------------------------------
...........................TCTGAAAACAACAGCAGCAATAAGTACTA..................................................................................................................................................................................................2911.001.00---1.00-----------------------------
...................................................................GTTTATGATATCGTGAGAGAATTAAAGC...........................................................................................................................................................2811.001.00---1.00-----------------------------
...................................................................................................................................................................................TTCCTTGACCATCCTTAGCA...................................................201.000.001.00--------------------------------
....................................................................................................................................................................................TCCTTGACCATCCTTATCAGT.................................................2111.002.00--1.00------------------------------
...................................................................................................................................................................................TTCCTTGACCATCCTTATCAA..................................................2111.006.001.00--------------------------------
...................................................................................................................................................................................TTCCTTGACCATCCTTATCAGC.................................................2211.00105.001.00--------------------------------
........................TACTCTGAAAACAACAGCAGC.............................................................................................................................................................................................................2111.001.00---------------------1.00-----------
...................................................................................................................................................................................TTCCTTGACCATCCTTATTAG..................................................211.000.001.00--------------------------------
.....................................................................................................................................................................................................................AGAAGCAAGTCTGCTGTCCTTCAT.............2411.001.00---------1.00-----------------------
................................................................................................................................................TTTGGTAAAGTTGGTTTAAAGT....................................................................................2211.001.00--------------------1.00------------
......................................................................................................................................................................................CTTGACCATCCTTATCAG..................................................1820.500.50-0.50-------------------------------

Antisense strand
CGAGCAGTATCTAAAGAGTTTTAGTACTCTGAAAACAACAGCAGCAATAAGTACTAATATTGAAAGTGTTTATGATATCGTGAGAGAATTAAAGCATACTACTTCTAGAACAGTTATTTCAATAATTACTAGAGAACTAGTCGTTTTGGTAAAGTTGGTTTAAAGTGATGACATGTATCTTCCTTGACCATCCTTATCAGATATTATTTTCCTAGAAGCAAGTCTGCTGTCCTTCATGCACAGTCTTCAT
..................................................................................................................................................((((((...(((((......((((.....))))......)))))...))))))...................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR189785SRR037938(GSM510476)
293Red. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
................................................................................................................................................................................................CTTATCAGATATTATTCC........................................ 181.000.00--------------------------------1.00
..................................................................................................................................................................................CTTCCTTGACCATCCTTATCAGATA............................................... 2511.001.00---1.00-----------------------------
..........................................................................................................................................................................................ACCATCCTTATCAGATATTATTTTCCTA.................................... 2811.001.00---1.00-----------------------------
..............................................................................................................................................................TTTAAAGTGATGACAATTG......................................................................... 191.000.001.00--------------------------------
..................................................................................................................................................................................................................CCTAGAAGCAAGTCTGCTGTCCTTCAT............. 2711.001.00---1.00-----------------------------
..............................................................................................................................................................................GTATCTTCCTTGACCATCTG........................................................ 201.000.00----------------------1.00----------
................................................................................................TACTACTTCTAGAACAGTTATTTCAATA.............................................................................................................................. 2811.001.00---1.00-----------------------------
.............................................................................................................................................................................................ATCCTTATCAGATATTATTTTCCTA.................................... 2511.001.00---1.00-----------------------------
..........................................................................................................................................................................................ACCATCCTTATCAGATATTATTTTCCTAA................................... 291.000.00---1.00-----------------------------
............................................................................................................................................................................ATGTATCTTCCTTGACCATCCTTATCA................................................... 2711.001.00---1.00-----------------------------