ID: uc001dxa.16
GENE: CELSR2(16)
chr1:109811003-109811252+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(19)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(2)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGGAGGAGGGCTTAGGGGCAGAGCATCCAGTGACCTGAGTGGGCAGTGCGGTCCAGGAGCATTTCAGGGGAGGCAACAGTGAGCACAGAGGGAGGGGCCTGGTGGGGAGCAGGGACTGGCCCGGGCACAGGCCGGGGCTCCATGGTGGGGATGTCAGGTGTGGGTTGTGAGCACACCCACCGTGACCTTGCCCACCCCAGAATCTGCTGCGGGTGGGCAGCGCCCTCCTGGACACAGCCAACAAGCGGCA
...............................................................................................................................................((((((((.((((((((.((..((....))..)))))).)))).)).))))))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189786SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189787SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGG.......................................................................................22174.0074.0034.0015.003.004.00-3.005.001.001.001.00-1.00-----1.00-1.00-----1.00----------------1.00-------1.001.00---
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGG.......................................................................................23132.0032.004.001.002.003.00-2.00---3.003.002.003.00--3.00-------2.001.00---------1.00-1.00---------1.00--------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGA.......................................................................................2210.000.00-3.001.00-3.00--1.00---------1.00----1.00--------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGG.......................................................................................2119.009.005.00-1.002.00-------1.00-------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGG......................................................................................2417.007.007.00------------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGGGG.......................................................................................227.000.005.001.001.00----------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGA......................................................................................2316.0074.003.00--2.00-1.00-------------------------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGG......................................................................................2215.005.00---1.00----------------1.00---------1.00-------1.00--------1.00-------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGA......................................................................................2414.0032.00----2.00-----------1.00----------------------1.00---------------
..................................................................................................................................................................................ACCGTGACCTTGCCCACCCCAG..................................................2213.003.00-------------3.00-----------------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGTAAT..................................................................................2613.002.00--------------3.00----------------------------------------
...............................................................................................................................................GGTGGGGATGTCAGGTGTGG.......................................................................................2013.003.00----3.00--------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGT......................................................................................2413.0032.002.00------------------------------------------------1.00-----
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGT.....................................................................................2312.002.00----------------------1.00------------------------------1.00-
..............................................................................................................................................TGGTGGGGATGTCAGGTAAAA.......................................................................................212.000.00----2.00--------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGG......................................................................................2312.002.00------------------1.00-----------------------------1.00------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGTTAG....................................................................................252.000.00----2.00--------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGAA.....................................................................................2412.0074.00--2.00----------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGT.........................................................................................2011.001.00--------------------------------------------1.00----------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGGTG.....................................................................................2511.0032.00--------1.00----------------------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGGGG.......................................................................................211.000.00-----1.00-------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGAT......................................................................................2411.001.00-------------------------------------------1.00-----------
............................................................................................................................................CATGGTGGGGATGTCAGGTGCGGG......................................................................................241.000.00--------1.00----------------------------------------------
....................................................................................................................................................GGATGTCAGGTGTGGGTTG...................................................................................1911.001.00------------1.00------------------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTATT........................................................................................201.000.00---------------------1.00---------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGTTTT...................................................................................2611.0074.00-------------------------1.00-----------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGT.........................................................................................2111.001.00-------------------------------------1.00-----------------
...................................................................................................................................................................................................................................CTGGACACAGCCAACAAGCAGCA231.000.00-------------------------------1.00-----------------------
............................................................................................................................................CATGGTGGGGATGTCAGGAT..........................................................................................201.000.00-------1.00-----------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTG........................................................................................2211.001.00--------------------1.00----------------------------------
.......................CATCCAGTGACCTGAGTGGGCAGTGCGG.......................................................................................................................................................................................................2811.001.00------------------------------------------------------1.00
.................................................................................................................................................................................CACCGTGACCTTGCCCACCCCA...................................................2211.001.00-------1.00-----------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGCGG.......................................................................................231.000.00--------1.00----------------------------------------------
......................................GTGGGCAGTGCGGTCGATA.................................................................................................................................................................................................191.000.00----------------------------------------1.00--------------
.................................................................................................................................................................................CACCGTGACCTTGCCCACCCCAG..................................................2311.001.00-----------------------------------1.00-------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGAA......................................................................................2411.001.00----------------------------1.00--------------------------
........................................................................................................................................................................................................AATCTGCTGCGGGTGG..................................1611.001.00----------------------------------------------------1.00--
.................................................................................................CCTGGTGGGGAGCAGGGACTGGC..................................................................................................................................2311.001.00---------------------------------------------1.00---------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGGGCT....................................................................................2411.005.00----------------1.00--------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGT.......................................................................................2311.001.00------------------1.00------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTATGG.......................................................................................231.000.00---------------------------------1.00---------------------
......................................GTGGGCAGTGCGGTCAGT..................................................................................................................................................................................................181.000.00------------------------1.00------------------------------
..............................................................................................................................................TGGTGGGGATGTCAGGTGTGA.......................................................................................211.000.00--1.00----------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGAT.....................................................................................2411.0074.00----------1.00--------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGCGG.......................................................................................221.000.00--------1.00----------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGGCAAT...................................................................................2611.0074.00--1.00----------------------------------------------------
....................................................................................................................................................................................................................................TGGACACAGCCAACAAGCGGCA2211.001.00---------------------1.00---------------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTAGT......................................................................................2411.001.00-------------------1.00-----------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTTG.......................................................................................2211.001.00-1.00-----------------------------------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGT.......................................................................................221.000.00-----------------------------1.00-------------------------
.............................................................................................................................................................................CACCCACCGTGACCTTGCCCATA......................................................231.000.00---------------------------1.00---------------------------
............................................................................................................................................CATGGTGGGGATGTCAGGTGTGA.......................................................................................2311.001.00-----1.00-------------------------------------------------
............................................................................................................................................CATGGTGGGGATGTCAG.............................................................................................1721.001.00--------------------------------1.00----------------------
.............................................................................................................................................ATGGTGGGGATGTCAGGTGTGTCG.....................................................................................241.000.00--------------------------1.00----------------------------
.............................................................................................................................................ATGGTGGGGATGTCAGG............................................................................................1720.500.50--------------------------0.50----------------------------
............................................................................................................................................CATGGTGGGGATGTCAGTTTT.........................................................................................2120.501.00-------0.50-----------------------------------------------
..............................................................................................................................ACAGGCCGGGGCTC..............................................................................................................1490.440.44----------------0.33----------0.11---------------------------

Antisense strand
AGGAGGAGGGCTTAGGGGCAGAGCATCCAGTGACCTGAGTGGGCAGTGCGGTCCAGGAGCATTTCAGGGGAGGCAACAGTGAGCACAGAGGGAGGGGCCTGGTGGGGAGCAGGGACTGGCCCGGGCACAGGCCGGGGCTCCATGGTGGGGATGTCAGGTGTGGGTTGTGAGCACACCCACCGTGACCTTGCCCACCCCAGAATCTGCTGCGGGTGGGCAGCGCCCTCCTGGACACAGCCAACAAGCGGCA
...............................................................................................................................................((((((((.((((((((.((..((....))..)))))).)))).)).))))))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189786SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189787SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................GTGAGCACAGAGGGAGCTC......................................................................................................................................................... 191.000.00-----------------------------------------1.00-------------
...............................................................................................GGCCTGGTGGGGAGCACCA........................................................................................................................................ 191.000.00-------1.00-----------------------------------------------
........................................................................................................................................................................................................AATCTGCTGCGGGTGGCC................................ 181.000.00------1.00------------------------------------------------