ID: uc001cbk.2
GENE: GNL2(7)
chr1:38042108-38042357-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(6)
B-CELL 		(4)
BRAIN 		(6)
BREAST 		(21)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AATGACTCACCTCTGATTTATTAATAAGCATATGTATCCAGCTTACTCAGATTATGTAGGTGGTGTGTATCTAGGCTTCAGATCAAGTTGTATCAACAGTTTTGCACTGTATTCTTGATATTAACAAAGTAATACAACCTACTTGTCCAAAGGGATATATATGACTGCATGTATGTGCTGTGTATTCTCTCTTTGAACAGTTGCACACTGACAAGAAACAGATCAGTGTTGGGTTCATTGGCTATCCAAA
...............................................................................................................................................(((.((((((((...((((.((.((((....)))).))))))..)))))))).)))...................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR189782SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577740(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACAGT.................................................23126.0026.005.006.00---------1.00--2.001.00--1.00----1.001.00-------1.00----1.00----1.00---1.00-----1.00--1.00-1.00-1.00-
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACAGA.................................................23115.0013.002.00----3.00-1.00---1.001.00--1.00--1.001.00------1.00-1.00-------------------------1.00-1.00----
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACAG..................................................22113.0013.00------3.002.00-3.00------------1.00--------1.00--1.00-1.00----------------1.00-------
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAAC....................................................2016.006.004.00---------1.00---------1.00----------------------------------------
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACAGAATC..............................................2615.0013.00---5.00---------------------------------------------------------
....................................................................................................................................................................................TGTATTCTCTCTTTGAACAGTT................................................2214.004.004.00------------------------------------------------------------
........................................................................................................................................................................................................................AACAGATCAGTGTTGGGTTCATT...........2314.004.00--4.00----------------------------------------------------------
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACA...................................................2114.004.00------------1.00--------------------------------1.00----1.00-------1.00--
.................................................................................................................................................TCCAAAGGGATATATATGACTGC..................................................................................2313.003.00------------------------------1.00----1.00---------------1.00---------
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAA.....................................................1913.003.00-----------------2.00---------------1.00---------------------------
....................................................................................................................................................................................................................AAGAAACAGATCAGTGTT....................1813.003.00--------3.00----------------------------------------------------
.................................................................................................................................................................................CTGTGTATTCTCTCTTTGAACAGT.................................................2412.002.00----------------2.00--------------------------------------------
...................................................................................................................................................................................GTGTATTCTCTCTTTGAACAGT.................................................2212.002.00-------------------1.00-------1.00---------------------------------
........................................................................................................................................................................................................................AACAGATCAGTGTTGGG.................1712.002.00-------------------------------------------1.00----1.00------------
..............................................................................................................................................TTGTCCAAAGGGATATATATGACTGTA.................................................................................271.000.00--1.00----------------------------------------------------------
.................................................................................................................................................TCCAAAGGGATATATATGACTGCA.................................................................................2411.001.00-1.00-----------------------------------------------------------
..............................................................................................................................................TTGTCCAAAGGGATATATATGAC.....................................................................................2311.001.00----1.00--------------------------------------------------------
........................................................................................................................................................................................................................AACAGATCAGTGTTGGGTTCATTGGC........2611.001.00----------------------------------------1.00--------------------
...................................................................................................................................................CAAAGGGATATATATAAA.....................................................................................181.000.00--------------------------------------------1.00----------------
...............................................................................................................................................TGTCCAAAGGGATATATATGACTGC..................................................................................2511.001.00------------------------------------------------------------1.00
...............................................................................................................................................TGTCCAAAGGGATATATATGAAA....................................................................................231.000.00---------------------------------------1.00---------------------
....................................................................................................................................................................................TGTATTCTCTCTTTGAACAGAA................................................221.000.00-----------------------------------------------1.00-------------
.................................................................................................................................................TCCAAAGGGATATATATGACTG...................................................................................2211.001.00----------1.00--------------------------------------------------
...............................................................................................................................................................TATGACTGCATGTATGTGCTGTGTATTCT..............................................................2911.001.00-------------1.00-----------------------------------------------
.........................................................................................................................................................................TGTATGTGCTGTGTATTCTCTCTTTGAACAG..................................................3111.001.00-------------1.00-----------------------------------------------
...................................................................................................................................................................................................................................GTTGGGTTCATTGGCAGT.....181.000.00-------------------------1.00-----------------------------------
................................................AGATTATGTAGGTGGTGTAGA.....................................................................................................................................................................................211.000.00--------------------------------------1.00----------------------
...............................................................................................................................................TGTCCAAAGGGATATATATGAC.....................................................................................2211.001.00----1.00--------------------------------------------------------
.....................................................................................................................ATATTAACAAAGTAAACTG..................................................................................................................191.000.00----1.00--------------------------------------------------------
...............................................................................................................................................................................................................................CAGTGTTGGGTTCATTGGCTATC....2311.001.00-----------------------------1.00-------------------------------
......................................................................................................................................................................................................AGTTGCACACTGACAAGAAACA..............................2211.001.00---------------------1.00---------------------------------------
........................................GCTTACTCAGATTATGTAG...............................................................................................................................................................................................1911.001.00-----------------------------------------1.00-------------------

Antisense strand
AATGACTCACCTCTGATTTATTAATAAGCATATGTATCCAGCTTACTCAGATTATGTAGGTGGTGTGTATCTAGGCTTCAGATCAAGTTGTATCAACAGTTTTGCACTGTATTCTTGATATTAACAAAGTAATACAACCTACTTGTCCAAAGGGATATATATGACTGCATGTATGTGCTGTGTATTCTCTCTTTGAACAGTTGCACACTGACAAGAAACAGATCAGTGTTGGGTTCATTGGCTATCCAAA
...............................................................................................................................................(((.((((((((...((((.((.((((....)))).))))))..)))))))).)))...................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR189782SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577740(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787
...........................................................................................................................................................TATATATGACTGCATCTAG............................................................................ 191.000.00----1.00--------------------------------------------------------
...................................................................................................................................ATACAACCTACTTGTCCAAGCT................................................................................................. 221.000.00-------------------------------------------------1.00-----------