ID: uc001bfj.61
GENE: HSPG2(61)
chr1:22191517-22191827-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO3.ip 		(5)
B-CELL 		(1)
BRAIN 		(17)
BREAST 		(26)
CELL-LINE 		(3)
CERVIX 		(3)
FIBROBLAST 		(9)
HEART 		(6)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(47)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CAGCGCTGCAGGGCCCTGAGAGGAGGAGCTACGAGATCATGTTCCGAGAGGTAAGGGGCACCTGGCCATGCTGTGTCTAACCCCACCCCACCCTCCACCCTGACTCAGAGCCTGGCTTTGATACCCACCCTGTCTCTCGCTCCCCAACCTTCACCTGGCAGCCCTCAGTCAGTGCCTGTAAGGCAGGATTTGGGGGGTGGTAACTGTAGGAGCAGCCCACAAAGCCCACTGCCCCCGCCCACGTTGCCACCCCCAACCCAGGAATTCTGGCGCCGGCCCGATGGGCAGCCGGCCACACGCGAGCACCTCCT
.........................................................................................................................................................................................((.....((((((((((((.((.((.((((.............)))).)).))....))))))))))))...))....................................................
.........................................................................................................................................................................................186........................................................................261................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR038854(GSM458537)
MM653. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038859(GSM458542)
MM386. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577453(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038860(GSM458543)
MM426. (cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577579(Rovira)
total RNA. (breast)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040036(GSM532921)
G243N. (cervix)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGC..................................................................................................23176.0076.0016.0013.001.00-3.002.00-2.003.001.00-2.001.001.001.001.00-2.00---2.00---1.00-1.00---3.001.001.00-1.001.00-1.00-1.00---2.00-2.002.00-1.00----------1.00-----1.00-1.001.001.00---1.00---------------------------------------1.00--------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAG...................................................................................................22160.0060.0014.0010.008.002.00-1.00---1.00-1.00-2.001.001.00------1.00-1.00-----2.00-1.00-1.00-1.00----1.001.002.001.00--------1.00-------------1.00-------------1.00-------1.00----------1.00---------1.00------------1.00-----
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAG...................................................................................................23158.0058.0010.008.0013.003.00--3.002.001.00--1.00--2.001.001.00------1.001.00-2.00-----1.00----2.00-1.00---------1.00------1.00--------------------------1.00-------------------------------------1.001.00------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGC..................................................................................................24148.0048.005.004.004.005.002.003.002.00---1.001.00-1.001.00----1.004.00-1.002.002.00----2.00----1.00----------1.00---1.00-----1.00----------------1.00----------------------------1.00----------------------1.00----
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGT..................................................................................................23118.0060.00-7.00---------1.002.00-----------------1.00-----1.00---1.00----------------------------------1.00------------1.00---------------1.00---------------1.00----1.00---
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGT..................................................................................................24116.0058.008.00-2.001.00------1.00-----------------------1.00----1.00-1.00--------------------------------------------------------1.00------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGA..................................................................................................23113.0060.00----1.00----2.00------1.00--1.00-1.00------------------------1.001.00------------------------1.001.00------------1.00---------------------1.00--------1.00-----------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAG...................................................................................................21112.0012.003.00----------------------1.00-----------------------------------2.00-2.00---2.00---------------------------------------------1.00-1.00---------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGA....................................................................................................22112.0012.00-1.001.002.001.00----------1.00------------1.00----1.00-----------------------------1.00-------1.00----1.00--------------1.00-------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGC..................................................................................................22110.0010.001.00---1.00---1.00---1.00--------------------------------1.00----------1.002.001.00-1.00--------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGA....................................................................................................2119.009.002.00-----1.00--1.00---------------1.00---------1.00--1.00---1.00-----------------------1.00--------------------------------------------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGAG...................................................................................................2418.008.008.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCTT................................................................................................2516.0076.001.00---------------------------2.00--------1.00------------------------1.00---------------------------------------1.00--------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGG.....................................................................................................2216.006.005.00-1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAA...................................................................................................2215.009.001.00-----------------2.00--------------------1.00-1.00---------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGA..................................................................................................2415.0058.00----------------1.00----------------1.00------1.00--------------------------------------1.00----------------1.00--------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAAT..................................................................................................2315.009.004.00---------------------------------------------------------------------------------------------------------------1.00----------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGA....................................................................................................2015.005.004.00--------------------------------------------------------------------------------------------------1.00-----------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAAT...............................................................................................264.000.00--3.00------------------1.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCAT................................................................................................264.000.00----------1.00------------------1.00----------------------------1.00-----1.00----------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCATT...............................................................................................264.000.00-------------------------------------------1.00------------------1.001.00----1.00------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGG.....................................................................................................2114.004.001.00-1.00------------1.00----------------------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCT.................................................................................................2414.0076.00--1.00--1.00-------------------------------------------------1.00-----------------------------------------------1.00-------------------------
...................................................................................................................................................................................................................................................................AGGAATTCTGGCGCCGGC..................................1813.003.00----2.00---------------------------------------------1.00------------------------------------------------------------------------------
.AGCGCTGCAGGGCCCTGAGAGGA...............................................................................................................................................................................................................................................................................................2313.003.00--3.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCA.................................................................................................2313.003.00------------------2.00------------------------------------------------------------------------------------------------1.00-------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGG..................................................................................................2413.0058.003.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGTT.................................................................................................2412.0060.00----------------------2.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGG.....................................................................................................2012.002.00------1.00-------------------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCATT...............................................................................................2512.003.00-----------------1.00---------------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAT................................................................................................252.000.00----------1.00-------------------------------------------1.00--------------------------------------------------------------------------
................................GAGATCATGTTCCGAGAG.....................................................................................................................................................................................................................................................................1812.002.00-----------------------------------1.00--------------------------------------------------------------------------------1.00------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCT.................................................................................................2512.0048.00--------------------------------------------------1.00----------------1.00-------------------------------------------------------------
.AGCGCTGCAGGGCCCTGAGAGGAG..............................................................................................................................................................................................................................................................................................2412.002.00---------------------------------------------------2.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGT..................................................................................................2212.0012.00---------1.00---1.00-------------------------------------------------------------------------------------------------------------------
.................GAGAGGAGGAGCTACGAGATC.................................................................................................................................................................................................................................................................................2112.002.00-----------------1.00---------------------------------------------------1.00-----------------------------------------------------------
...CGCTGCAGGGCCCTGAGAGGAGGAGCTAAG......................................................................................................................................................................................................................................................................................301.000.00-------------------------------------------------------------------------1.00-------------------------------------------------------
...........GGCCCTGAGAGGAGGAGC..........................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................GAATTCTGGCGCCGGCCCGATGGG..........................2411.001.00--------------------------------------------------------------------------------1.00------------------------------------------------
................................................................................................................................................................................................GGGGGTGGTAACTGTAGGAGCATT...............................................................................................241.000.00------------1.00--------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCGCCCACGTTGCCACCCCCA........................................................2411.001.00-----------------------------------------------------------------------------------------------1.00---------------------------------
..........GGGCCCTGAGAGGAGGAG...........................................................................................................................................................................................................................................................................................1821.001.00----------------------------------------------------0.50--------------------------------------------------------------------------0.50-
....................................................................................................................................................................................................................................................................................................CCACACGCGAGCACCTC..1711.001.00-------------------------------------------------------------------------------------------------------------1.00-------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGA....................................................................................................2311.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
..GCGCTGCAGGGCCCTGAGAGGAGGAGCT.........................................................................................................................................................................................................................................................................................2811.001.00------------------------------------------------1.00--------------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCATA..............................................................................................................................................................................................................................................................................261.000.00------------------------------------------------1.00--------------------------------------------------------------------------------
.................GAGAGGAGGAGCTACTGA....................................................................................................................................................................................................................................................................................181.000.00----------------------------------------------------------------------1.00----------------------------------------------------------
.....................GGAGGAGCTACGAGATCATGTT............................................................................................................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------------------1.00-----------------------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCATC...............................................................................................231.000.00----------1.00----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGAA.................................................................................................2311.0012.00-------------------------------------------------------------------------------------------------1.00-------------------------------
.......................AGGAGCTACGAGATCATGTT............................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------1.00---------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGAG.................................................................................................2511.0058.00-------------------1.00-------------------------------------------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCA................................................................................................................................................................................................................................................................................2411.001.00----------------------------------------------------------------------------------------------------------------------1.00----------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAG......................................................................................................2111.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCT.................................................................................................2311.0010.00-------------------------------------------------------------------------------------1.00-------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCATTTT.............................................................................................291.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
.....CTGCAGGGCCCTGAGAGGAGGAGCTACG......................................................................................................................................................................................................................................................................................2811.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAT...................................................................................................2311.0012.00------------------------------------------1.00--------------------------------------------------------------------------------------
...................................................................................CACCCCACCCTCCACGCCC.................................................................................................................................................................................................................191.000.00------------------------------------------------------------------------------------1.00--------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCATG..............................................................................................................................................................................................................................................................................2611.001.00------------------------------------------------1.00--------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAAA..................................................................................................2211.005.00----------------------------------------------------------------------------------------------------------1.00----------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAAT..................................................................................................2411.0012.00-----------------------------------------------------------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAG......................................................................................................2011.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCATT...............................................................................................231.000.00----------------------------------------------------------------1.00----------------------------------------------------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCAT................................................................................................221.000.00-----------------------------------------------------------------------------------------------------------1.00---------------------
...........GGCCCTGAGAGGAGGAGCTAC.......................................................................................................................................................................................................................................................................................2111.001.00----------------------------------------------------1.00----------------------------------------------------------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGAGC..................................................................................................2511.001.00--------------------------------------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAA................................................................................................251.000.00------------------------------------------------------------------------------1.00--------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTA.......................................................................................................1811.001.00---------------------------------------------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCAT................................................................................................2411.003.00----------1.00----------------------------------------------------------------------------------------------------------------------
.................................AGATCATGTTCCGAGAGGTAAGGGGCA...........................................................................................................................................................................................................................................................2711.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGA..................................................................................................2211.0012.00------------------------------------------------------1.00--------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGA...................................................................................................................................................................................................................................................................................2111.001.00-------1.00-------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCCT................................................................................................2511.0076.00--------------------------------------------------------------------------------------------1.00------------------------------------
.......................................................................................................................................................................................................................................CCCCCGCCCACGTTGCCACC............................................................2011.001.00----------------1.00----------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................GCCCACGTTGCCACCCCCAACCCAG..................................................2511.001.00----------------------------------------------------------------------------------1.00----------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGTAGC..................................................................................................2411.001.00-------------------------1.00-------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGTT.................................................................................................2511.0058.00--------1.00------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGCGA..................................................................................................2311.002.00----1.00----------------------------------------------------------------------------------------------------------------------------
...................................ATCATGTTCCGAGA......................................................................................................................................................................................................................................................................1420.500.50---------------------------------------------------------------------------0.50-----------------------------------------------------
................TGAGAGGAGGAGCTACG......................................................................................................................................................................................................................................................................................1720.500.50------------------------------------------------------------------------------------------------------------------------------0.50--
.....................................................................................................................................................................................................................................TGCCCCCGCCCACGTT..................................................................1620.500.50--------------------------------------------------------------------------0.50------------------------------------------------------
.....................GGAGGAGCTACGAGA...................................................................................................................................................................................................................................................................................1520.500.50-----0.50---------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCGCCCACGTT..................................................................1490.110.11----------------------------------------------------------------------------0.11----------------------------------------------------
...................................................................................................................................................................................................................................................................AGGAATTCTGGCG.......................................13100.100.10----0.10----------------------------------------------------------------------------------------------------------------------------

Antisense strand
CAGCGCTGCAGGGCCCTGAGAGGAGGAGCTACGAGATCATGTTCCGAGAGGTAAGGGGCACCTGGCCATGCTGTGTCTAACCCCACCCCACCCTCCACCCTGACTCAGAGCCTGGCTTTGATACCCACCCTGTCTCTCGCTCCCCAACCTTCACCTGGCAGCCCTCAGTCAGTGCCTGTAAGGCAGGATTTGGGGGGTGGTAACTGTAGGAGCAGCCCACAAAGCCCACTGCCCCCGCCCACGTTGCCACCCCCAACCCAGGAATTCTGGCGCCGGCCCGATGGGCAGCCGGCCACACGCGAGCACCTCCT
.........................................................................................................................................................................................((.....((((((((((((.((.((.((((.............)))).)).))....))))))))))))...))....................................................
.........................................................................................................................................................................................186........................................................................261................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR038854(GSM458537)
MM653. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038859(GSM458542)
MM386. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577453(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038860(GSM458543)
MM426. (cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577579(Rovira)
total RNA. (breast)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040036(GSM532921)
G243N. (cervix)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................................................................AGCCCTCAGTCAGTG......................................................................................................................................... 1571.711.71----0.14--------------------0.710.430.14----------------------------------------------------------------------------------------------------0.29
...........................................................................................................................................................................................................................................CGCCCACGTTGCCACCCG.......................................................... 181.000.00---------------------------------------------------------------------------------------1.00-----------------------------------------
...................................................................................CACCCCACCCTCCACCCTGTCA.............................................................................................................................................................................................................. 221.000.00------------------------------------------------------------------------------------------1.00--------------------------------------
...........................................CCGAGAGGTAAGGGGCCGC......................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................GCCACCCCCAACCCAGGATGGG............................................ 221.000.00----------------------------------------------------------------------------------------------1.00----------------------------------
....................................................................................................................................................CTTCACCTGGCAGCCAACC................................................................................................................................................ 191.000.00-----------------------------------------------------------------------------------------------------------------------1.00---------
...........................................CCGAGAGGTAAGGGGC............................................................................................................................................................................................................................................................ 1611.001.00---------------------------------------------------------------------------------------------------------1.00-----------------------
............................................CGAGAGGTAAGGGGC............................................................................................................................................................................................................................................................ 1530.330.33-----------------------------------------------------0.33---------------------------------------------------------------------------