ID: uc001aea.20
GENE: ACAP3(20)
chr1:1238612-1238861-


(2)
AGO2.ip 		(1)
B-CELL 		(10)
BREAST 		(24)
CELL-LINE 		(4)
CERVIX 		(2)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
CCACCCTCCCCTCCCAGACGGGCCTCCAAGCCCCAGGCAGGCCCAGGCGTGAGGAAGCTGCACCGGGGCACTGAGTCCTGAGTGCCAACGCCCTGAGTGGAACCTACCCTGGGAGCTCTTCCTGCCTCTGAGTGGCCGTGTGTGGTGGCGAGTGCAGGCGCCAGTGCCCACTGTGCTCACCACGCCCCGCTGGCCCACAGCTGGTGAAGCTGTGCAGTGGCATGGTGGAAGCCGGTAAGGCCTACGTCAG
...................................................................................................................................(((((((((((((((((((((((..((((....)))))))).))).))))))))...)).)))).))....................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR189783SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR189785SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040010(GSM532895)
G529N. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		GSM532886(GSM532886)
G850T. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGC...............................................................................................23115.0015.00-4.00----3.00-1.002.00---1.002.00------1.00----------------1.00----------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGC........................................................2118.008.00---1.00---2.00--2.00----1.001.00------------1.00-------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGT.................................................................................................2116.006.00--------------------1.00--1.00------1.00------1.00-------1.001.00--------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCA..............................................................................................2414.004.00--------1.00------------------------1.00------------------1.00----1.00---
....................................................................................................................................TGGCCGTGTGTGGTGGCGAG..................................................................................................2014.004.00---1.00-2.00----------------------1.00--------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCC.......................................................2213.003.00-----------2.001.00------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAG.............................................................................................2512.002.002.00------------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCT..............................................................................................2412.0015.00------------------------------------------1.00-----------1.00------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCAT....................................................2312.001.00------------------------------------1.00--------------1.00---------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTG................................................................................................2212.002.001.00------------------------------1.00-----------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGA...............................................................................................2312.002.00---1.00---------1.00-----------------------------------------------
...CCCTCCCCTCCCAGACG......................................................................................................................................................................................................................................1711.001.00---------------------------------------1.00---------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAAC............................................................................................2611.004.00-----------------------------------------------------1.00-------
..............................................................................................................................................................................GCTCACCACGCCCCGCTGGCCCA.....................................................2311.001.00----1.00--------------------------------------------------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCATAA..................................................2511.001.00--------------------------------------------------------1.00----
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTTTTT.............................................................................................2511.006.00----1.00--------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGA........................................................211.000.00------------------1.00------------------------------------------
......................................................................................AACGCCCTGAGTGGAACCTACCCT............................................................................................................................................2411.001.00----------------------------------1.00--------------------------
..........................................................................................................................................................................................................GGTGAAGCTGTGCAGTGGCATGGTGGAAGCC.................3111.001.00-----------------------------------1.00-------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGAT................................................................................................2211.004.00-----------------------------------------1.00-------------------
........................................................................................................................................................................................................................GTGGCATGGTGGAAGCCGGTA.............2111.001.00---------------------------1.00---------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCACT...................................................2611.001.00--1.00----------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGGG................................................................................................2211.004.00---1.00---------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGCGCA..............................................................................................2411.004.00--1.00----------------------------------------------------------
...................................................AGGAAGCTGCACCGGGGC.....................................................................................................................................................................................1811.001.00------------------------1.00------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAA.............................................................................................2511.004.00-------------------------------------------------1.00-----------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGT...............................................................................................2311.002.00--------------------------------------------------1.00----------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCAGA...................................................261.000.00-1.00-----------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGAT.......................................................221.000.00-----------------------------------------------1.00-------------
......................................................................................................................................................................CCCACTGTGCTCACCACGCCCCGCTGGCCCACA...................................................3311.001.001.00------------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGAT...........................................................181.000.00-------------------------------------------------------1.00-----
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCAAT.....................................................2411.008.00----1.00--------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAT.............................................................................................2511.004.00-------------------------1.00-----------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAT..................................................................................................201.000.00-----1.00-------------------------------------------------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCA.....................................................2211.001.00--------------------------------1.00----------------------------
..............................................................................................................................TCTGAGTGGCCGTGTGTGGAA.......................................................................................................211.000.001.00------------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGCGC...............................................................................................2311.004.00--1.00----------------------------------------------------------
........................................................................GAGTCCTGAGTGCCAACGCCCTGAG.........................................................................................................................................................2511.001.00-------------------1.00-----------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCAC....................................................2511.001.00-------------------------------------------1.00-----------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGGGC...............................................................................................2311.004.00-----------------1.00-------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCTCT...................................................261.000.00--1.00----------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCT.......................................................2211.008.00--------------------------------------------1.00----------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCA.......................................................2211.008.00--------------------------1.00----------------------------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGC........................................................1911.001.00---1.00---------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAGT............................................................................................2611.002.00------------1.00------------------------------------------------
.......................................................................................................................................CCGTGTGTGGTGGCGAGT.................................................................................................1820.500.50---------------0.50---------------------------------------------
..............................................................................................................................................................................GCTCACCACGCCCCGCT...........................................................1720.500.50----------------------------------------------------------0.50--
.........................................................................................................ACCCTGGGAGCTCTTCCT...............................................................................................................................1830.330.33-----------------------------------------------------------0.33-
....................................................................................................................................TGGCCGTGTGTGGTGGCG....................................................................................................1830.330.33------------------------------------------------------------0.33

Antisense strand
CCACCCTCCCCTCCCAGACGGGCCTCCAAGCCCCAGGCAGGCCCAGGCGTGAGGAAGCTGCACCGGGGCACTGAGTCCTGAGTGCCAACGCCCTGAGTGGAACCTACCCTGGGAGCTCTTCCTGCCTCTGAGTGGCCGTGTGTGGTGGCGAGTGCAGGCGCCAGTGCCCACTGTGCTCACCACGCCCCGCTGGCCCACAGCTGGTGAAGCTGTGCAGTGGCATGGTGGAAGCCGGTAAGGCCTACGTCAG
...................................................................................................................................(((((((((((((((((((((((..((((....)))))))).))).))))))))...)).)))).))....................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR189783SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR189785SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040010(GSM532895)
G529N. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		GSM532886(GSM532886)
G850T. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
......................................................................................................................................................................................CGCCCCGCTGGCCCAGGG.................................................. 181.000.00------------------------------------------------1.00------------
...............................................................................................................GGAGCTCTTCCTGCCTCTT........................................................................................................................ 191.000.00--1.00----------------------------------------------------------
..........................................................................................................................................................................CTGTGCTCACCACGCAGCG............................................................. 191.000.00----------------------1.00--------------------------------------
.................................................................................................................AGCTCTTCCTGCCTCGGTG...................................................................................................................... 191.000.00----------------------------------------1.00--------------------
..........................................................................................................................................................CAGGCGCCAGTGCCCACTAGT........................................................................... 211.000.001.00------------------------------------------------------------