ID: hsa-mir-6893
GENE: NFKBIL2(8)
chr8:145660884-145661090-


(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(10)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(38)
CELL-LINE 		(1)
CERVIX 		(2)
HELA 		(3)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
XRN.ip

Sense strand
CCAGGGTCTCAGAGCCCAGTGGGGACAGCTCTGCGGCAGGCCAGCCCTTGGTGGGTATGCAGACCTGGAGCAGAGCCCTCTCCCCACTCCGGGCAGGCAGGTGTAGGGTGGAGCCCACTGTGGCTCCTGACTCAGCCCTGCTGCCTTCACCTGCCAGGGTCCGGCCCCGCCCCCTCCCATCCGGGTTCGAGTTCAAGTTCAGGATCA
...........................................................................................((((((.(((((((((((((((((......)))))).......))))))).))))...))))))....................................................
........................................................................................89..................................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189785SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR189784SRR029129(GSM416758)
SW480. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM956925Ago2D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR191429(GSM715539)
166genomic small RNA (size selected RNA from . (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
.............................................................................................CAGGCAGGTGTAGGGTGGAGC.............................................................................................21112.0012.008.002.00-----1.00-------1.00----------------------------------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGCC............................................................................................2219.009.00--1.001.00-1.00---1.00------1.00--------1.00-1.00-------------------1.00------1.00-------------
.............................................................................................CAGGCAGGTGTAGGGTGGAG..............................................................................................2019.009.00--3.00---1.00---1.00-------------------1.00---1.00------1.00------------------1.00-------
..............................................................................................AGGCAGGTGTAGGGTGGAGCC............................................................................................2119.009.004.00---1.00-----1.00-------------------------1.00-----1.00-------------1.00-----------
.......................................................................................................................................CCCTGCTGCCTTCACCTGCCAGT.................................................2316.001.00---1.002.00-------1.00-----1.00------------------------------------------1.00------
.............................................................................................CAGGCAGGTGTAGGGTGGAGCCT...........................................................................................2315.009.004.00-------------------------------------1.00-----------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGA...............................................................................................1912.002.00-2.00------------------------------------------------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGCCAA..........................................................................................2412.009.00---2.00----------------------------------------------------------------
...............................................................................................................................................................TCCGGCCCCGCCCCCTCCCG............................202.000.00--------1.00-------------------1.00---------------------------------------
..............................................................................................AGGCAGGTGTAGGGTGGAG..............................................................................................1912.002.00-------------------1.00---------1.00--------------------------------------
.............................................................................................CAGGCAGGTGTAGGGTG.................................................................................................1712.002.00--------------------1.00------------------1.00----------------------------
................CAGTGGGGACAGCTCTGCGGCAGG.......................................................................................................................................................................2412.002.00-2.00------------------------------------------------------------------
.................................................................................................CAGGTGTAGGGTGGAGCCT...........................................................................................192.000.002.00-------------------------------------------------------------------
..............................................................................................AGGCAGGTGTAGGGTGGAGCAT...........................................................................................2212.002.00----------------------1.00-1.00-------------------------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGCCA...........................................................................................2312.009.00-----1.00-----1.00--------------------------------------------------------
.......................................................................................................................................CCCTGCTGCCTTCACCTGCCAGA.................................................2312.001.00------------1.00-------------------1.00-----------------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGTAT...........................................................................................2312.009.00--------------2.00-----------------------------------------------------
..............................................................................................AGGCAGGTGTAGGGTGGAGC.............................................................................................2012.002.00-----2.00--------------------------------------------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGCCAT..........................................................................................2412.009.00---1.00----------------------------------------1.00-----------------------
..............................................................................................AGGCAGGTGTAGGGTGGAGCCCACTGTGGCTCCTGT.............................................................................361.000.00---------------------------------1.00----------------------------------
............................CTCTGCGGCAGGCCAGGCCC...............................................................................................................................................................201.000.00--------1.00-----------------------------------------------------------
......................GGACAGCTCTGCGGCAGGCCAGCCCTTGGG...........................................................................................................................................................301.000.00------1.00-------------------------------------------------------------
.....................GGGACAGCTCTGCGGCA.........................................................................................................................................................................1711.001.00-------------------------------1.00------------------------------------
..................................................................................................................................................................................ATCCGGGTTCGAGTTCAAGTTCAGGACCA291.000.00----------------------------------------------1.00---------------------
.......................................................................................................................................CCCTGCTGCCTTCACCTGCCAGTATC..............................................2611.001.00----------------------------------------------------1.00---------------
..............................................................................................AGGCAGGTGTAGGGTGGAGCCCACT........................................................................................2511.001.00---------1.00----------------------------------------------------------
.......CTCAGAGCCCAGTGGGGACAGCTCTGCGGCAGGCCA....................................................................................................................................................................3611.001.00-1.00------------------------------------------------------------------
.......................................................................................................................................CCCTGCTGCCTTCACCTGCCAG..................................................2211.001.00-----------------------------------1.00--------------------------------
..............................................................................................AGGCAGGTGTAGGGTGGAGCCT...........................................................................................2211.009.00------------------1.00-------------------------------------------------
..............................................................................................AGGCAGGTGTAGGGTGGAATTT...........................................................................................221.000.00-----------------1.00--------------------------------------------------
.................................................................TGGAGCAGAGCCCTCTGAG...........................................................................................................................191.000.00-------1.00------------------------------------------------------------
.........................CAGCTCTGCGGCAGGCCAGCCCT...............................................................................................................................................................2311.001.00-------------------------------------------------------1.00------------
.....................GGGACAGCTCTGCGG...........................................................................................................................................................................1521.001.00---------------------0.50-----------------------------------------0.50----
......................................................................................................................................GCCCTGCTGCCTTCACCTGCCAGA.................................................241.000.00-------------------------------------------1.00------------------------
.........................................................................................................................................................CCAGGGTCCGGCCCCGGGG...................................191.000.00----------------1.00---------------------------------------------------
...............CCAGTGGGGACAGCTCTGCGGCAGGCCAG...................................................................................................................................................................2911.001.00-1.00------------------------------------------------------------------
..............................................................................................AGGCAGGTGTAGGGTGGAGA.............................................................................................2011.002.00-------1.00------------------------------------------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGCA............................................................................................2211.0012.00-----------1.00--------------------------------------------------------
..........................................................GCAGACCTGGAGCAGAGCCC.................................................................................................................................2011.001.00----------------------------------------------------------1.00---------
.......................................................................................................................................CCCTGCTGCCTTCACCTGCCATTT................................................2411.001.00-----------------------1.00--------------------------------------------
..............................................................................................AGGCAGGTGTAGGGTGGAGAAA...........................................................................................2211.002.00---------------------1.00----------------------------------------------
.......................GACAGCTCTGCGGCAGGCCAGCCCTTG.............................................................................................................................................................2711.001.00-------------------1.00------------------------------------------------
..............................................................................................AGGCAGGTGTAGGGTGGAGCAA...........................................................................................2211.002.00-----------------------------------------------------1.00--------------
.............................................................................................CAGGCAGGTGTAGGGTGGAAA.............................................................................................2111.002.00--1.00-----------------------------------------------------------------
.....................GGGACAGCTCTGCGGCAGGCCAG...................................................................................................................................................................2311.001.00------------------------------------------------1.00-------------------
..............................................................................................AGGCAGGTGTAGGGTGGAGCCCAAT........................................................................................251.000.00----1.00---------------------------------------------------------------
.......................................................................................................................................CCCTGCTGCCTTCACCTGCCAGTA................................................2411.001.00--------------------------------------------------1.00-----------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGAAA...........................................................................................2311.009.00---------------1.00----------------------------------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGCTTTT.........................................................................................2511.0012.00----------------------------------------1.00---------------------------
.......................................................................................................................................CCCTGCTGCCTTCACCTGCCA...................................................2111.001.00-1.00------------------------------------------------------------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGCCTTT.........................................................................................2511.009.00---------------------------------------------------1.00----------------
.............................................................................................CAGGCAGGTGTAGGGTGGAGA.............................................................................................2111.009.00--------------------------1.00-----------------------------------------
.............................................................................................................................................................GGTCCGGCCCCGCCCCCCC...............................191.000.00-------------------------------------------------1.00------------------
............................................................................CCTCTCCCCACTCCGCCCC................................................................................................................191.000.00-------------1.00------------------------------------------------------
...................................................................................................GGTGTAGGGTGGAGCC............................................................................................1620.500.500.50-------------------------------------------------------------------
..............................................................................................AGGCAGGTGTAGGGTGG................................................................................................1720.500.50--------------------0.50-----------------------------------------------
..................................................................................................................................................................................ATCCGGGTTCGA.................1250.200.20-----------------------------------------------------------------0.20--

Antisense strand
CCAGGGTCTCAGAGCCCAGTGGGGACAGCTCTGCGGCAGGCCAGCCCTTGGTGGGTATGCAGACCTGGAGCAGAGCCCTCTCCCCACTCCGGGCAGGCAGGTGTAGGGTGGAGCCCACTGTGGCTCCTGACTCAGCCCTGCTGCCTTCACCTGCCAGGGTCCGGCCCCGCCCCCTCCCATCCGGGTTCGAGTTCAAGTTCAGGATCA
...........................................................................................((((((.(((((((((((((((((......)))))).......))))))).))))...))))))....................................................
........................................................................................89..................................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189785SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR189784SRR029129(GSM416758)
SW480. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM956925Ago2D5(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR191429(GSM715539)
166genomic small RNA (size selected RNA from . (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
......................GGACAGCTCTGCGGCAGGCCAG................................................................................................................................................................... 2214.004.003.00-----1.00-------------------------------------------------------------
......................GGACAGCTCTGCGGCAGGCCA.................................................................................................................................................................... 2112.002.00-----------------1.00---------------------------------------1.00----------
.............................................................................CTCTCCCCACTCCGGTAAG............................................................................................................... 191.000.00--------1.00-----------------------------------------------------------
..........................................................................GCCCTCTCCCCACTCCGG................................................................................................................... 1811.001.00-------------1.00------------------------------------------------------
.......................GACAGCTCTGCGGCAGGCCAGT.................................................................................................................................................................. 221.000.00-----------------------------------------------------------1.00--------
..................................................................................................................................................................GGCCCCGCCCCCTCCC............................. 1601.001.00-------------------------------------1.00------------------------------
.......CTCAGAGCCCAGTGGGGACAGCTCTGCGGC.......................................................................................................................................................................... 3011.001.00---------------------------------------------1.00----------------------
...........................................................................CCCTCTCCCCACTCCGG................................................................................................................... 1740.500.50--------------------------------------------------------------0.50-----
........................................................................................................................................................................GCCCCCTCCCATCCGCGAA.................... 190.170.00-------------------------------------------------------------------0.17
...........................................................................................................................................................................................CGAGTTCAAGTTCAG..... 1560.170.17----------------------------------------------------------------0.17---
........................................................................................................................................................................GCCCCCTCCCATCCG........................ 1560.170.17------------------------------------------------------------------0.17-
..............................................................................................................................................GCCTTCACCTGCCAGG................................................. 1680.120.12----------------------------------------------------------------0.12---