ID: hsa-mir-6886
GENE: LDLR(8)
chr19:11224076-11224260+


(1)
AGO1.ip
(5)
AGO2.ip
(1)
AGO3.ip
(11)
B-CELL
(5)
BRAIN
(21)
BREAST
(52)
CELL-LINE
(3)
CERVIX
(2)
FIBROBLAST
(5)
HEART
(7)
HELA
(4)
LIVER
(4)
OTHER
(1)
RRP40.ip
(29)
SKIN
(3)
UTERUS
(1)
XRN.ip

Sense strand
GCCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAGGTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTGCCTCAGCACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCA
..................................................................................(((((.((((.((((((((........)).)))))).))))..))))).......................................................
..........................................................................75..........................................................135................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038863(GSM458546)
MM603. (cell line)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR038857(GSM458540)
D20. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029124(GSM416753)
HeLa. (hela)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR029127(GSM416756)
A549. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189787SRR390723(GSM850202)
total small RNA. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037938(GSM510476)
293Red. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)
GSM359189(GSM359189)
HepG2_2pm_3. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040018(GSM532903)
G701N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR343334SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...............................................................................CCCGCAGGTGAGATGAGGGCT.....................................................................................21185.0085.003.006.006.004.0012.00-4.002.006.00-2.002.00--1.001.001.002.002.004.00---1.00---3.001.001.002.00--------1.001.002.00-1.001.00--1.00--1.00---------------------1.00---1.00--1.00-----1.00------1.00--1.00-------------------1.00-1.001.00------------------1.001.00------------
...............................................................................CCCGCAGGTGAGATGAGG........................................................................................18134.0034.0022.00--------3.001.00--5.00----------------------------1.00-------1.00-------------------------------------------------------------------------------1.00--------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTT...................................................................................23126.0085.00-6.00-2.00--1.001.00----2.00-1.00-------1.002.00----------1.00-1.002.00--------1.00-1.00-------1.00-----------1.00--------------1.00-------------------------------------------------1.00-----------------
...............................................................................CCCGCAGGTGAGATGAGGGCTT....................................................................................22120.0085.002.007.00-1.00--2.00-1.001.00----1.001.00-------------------------------1.00-------1.00-1.00-------------------------------------------1.00-------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGG.......................................................................................19119.0019.00----5.002.001.001.00-1.001.00--------------4.00--1.00----------------------1.00-----------1.00------------------------------------------------------------1.00--------------------------
...............................................................................CCCGCAGGTGAGATGAGGGC......................................................................................20119.0019.006.00----1.001.001.00-1.001.00---------------------2.00------------------------1.00----1.00-----------1.00-----------------------------------------------1.00--1.00-------------1.00-----------
...............................................................................CCCGCAGGTGAGATGAGGGCTAT...................................................................................23113.0085.002.001.00--------------1.00-------1.00----1.00----------------1.00--------1.00----------------------------1.00--1.00-----1.00----------1.00-----------1.00----------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCT.....................................................21113.0013.00--2.00-------1.001.00------1.00------------------------------1.00--------1.00------1.00----------------------1.00----------1.00-------1.00-------------1.00----------1.00------------------
...............................................................................CCCGCAGGTGAGATGAG.........................................................................................17112.0012.006.00----3.00--------1.00-----------------------------------------------------------------1.00--------------------------------1.00-------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCC...................................................................................23110.0010.00-3.00--------------------1.00------1.00------------------1.00-----------------------------1.00-----------1.00-----------------------------------1.00---------1.00--------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCA...................................................2319.009.00--5.00--------------------------------2.00--------------------------------------------------------------------------1.00---1.00------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCC...................................................................................2219.009.00-2.001.003.00------------1.00----------------1.00---------------------------------------1.00-----------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTA...................................................................................2318.0085.002.001.00-1.00------------1.00-----1.00-----1.00---------------------------------------------------------------------------------------------------1.00----------------------
..............................................................................GCCCGCAGGTGAGATGAGG........................................................................................1918.008.00-----8.00-------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTT..................................................................................2418.0085.00-------1.00----1.00---------1.00-----------1.00-1.00--------2.00--------------------------------------------------------------------------1.00------------------------------
...............................................................................CCCGCAGGTGAGATGAGGA.......................................................................................1916.0034.001.00--------1.001.001.00---------------------------------------1.00--------------------------------------------------1.00------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCC...................................................................................2115.005.00-1.00--------------1.00----------------1.00------------------------------------------------------------------1.00--------------------------1.00-----------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTC....................................................................................2215.005.00-2.00------1.00-----------------------------1.00--------------1.00-------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTA....................................................................................2214.0085.002.00-----1.00---------------------------------------------1.00--------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTC....................................................................................2114.004.00--------1.00---1.00--------------------1.00-------------------------------------1.00-------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATT..................................................................................2413.0085.00---2.00---1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTC....................................................2213.003.00--1.00------------------------------------------------------------------1.00---------------------------------1.00-----------------------------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCG..............................................................................5713.003.00---------------------3.00---------------------------------------------------------------------------------------------------------------------------------
.......ATAGAATCTACTGGTCTGACCTG...........................................................................................................................................................2313.003.00---3.00---------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTTT.................................................................................2513.0085.00---1.00---1.00---------------1.00-------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCT...................................................2313.003.00--3.00----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTA..................................................................................2413.0085.00-1.00----------1.00-------------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCT...................................................................................2313.005.00-1.00------------------------------------------------------------------------------------1.00-----------1.00----------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCCTA.................................................................................252.000.00------------------------2.00------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCT...................................................................................2212.004.00-1.00------------------------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGA........................................................................................1812.0012.002.00------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTTAAA.................................................................................232.000.00-------------------------------2.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTTT...................................................2312.0013.00-----------------------------------------------------------------------------------------1.00----1.00--------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCA.....................................................................................2112.0019.00------1.00---------------------------------------------------------1.00--------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTAT...................................................2312.0013.00--------------------2.00----------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTC....................................................................................2012.002.00--2.00----------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCCATT................................................................................2412.005.00--------------------2.00----------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTAT..................................................................................2412.0085.00-1.00-----1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCAA....................................................................................2212.0019.002.00------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAA...................................................................................2312.0085.00--------------1.00----------------------------1.00-----------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCC......................................................2022.002.00----------------------------------0.50----------------------------------------------------------------------------------------------------------0.500.500.50-------
.......ATAGAATCTACTGGTCTGACCTGTCC........................................................................................................................................................2612.002.00-------2.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGT.......................................................................................1911.0034.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
.......................TGACCTGTCCCAGAGAATGATCTGCA........................................................................................................................................2611.001.00------------------------1.00------------------------------------------------------------------------------------------------------------------------------
..........................CCTGTCCCAGAGAATGATCTGCAG.......................................................................................................................................2411.001.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGA..........................................................................................1611.001.00---------------------------------------------------------------------------------------------------------------1.00---------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGAA......................................................................................2011.0034.00----------------------------------------------------------1.00--------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGAC......................................................................................2011.0034.00--------------------------------------------------------------------------------------------------------------------------------------1.00----------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATTT.................................................................................2511.0085.00---------------------------------------------------------------------------------------------------------------------------1.00---------------------------
...............................................................................CCCGCAGGTGAGATG...........................................................................................1511.001.00----------------------------------------------------------------------------------------------------------1.00--------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCAT..................................................................................2311.004.00----------------------------------------1.00--------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTGA...................................................................................2311.0085.00------------------------------------------------------------------------------------------------------------1.00------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAA..................................................................................2411.0085.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTTATT.................................................................................2411.001.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCTT..................................................................................2411.005.00----------------------------------------------------------------------------------------------------------------1.00--------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTAT.................................................................................2511.0085.00---------------------------------------------------------------------------------1.00---------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTAA.................................................................................2511.0085.00----------------------------------------------------------------------------------1.00--------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGC.......................................................1921.001.000.50-----------------------------------------------------------------------------------------------------------------------------------------------0.50------
.........AGAATCTACTGGTCTGA...............................................................................................................................................................1711.001.00-------------------------------------------------------------------------------------------------------------1.00-----------------------------------------
..................................................................................................................CCTTCTCTCCTCCTGCCTCAGT.................................................221.000.00----------------------------------------------------------------------1.00--------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCCACA................................................................................2411.005.00------------------------------------------------------1.00------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCTTT.................................................................................2511.005.00------------1.00------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCCA....................................................................................2211.0019.00------1.00------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................GGCCCGCAGGTGAGATGAGGGCTC....................................................................................2411.001.00---------------------------------------1.00---------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCATTT..................................................................................2411.0019.00--------------------------------------------------------1.00----------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGAT.....................................................................................2111.0019.00------------------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................................................................CTCCTGGCGCTGATGC.......................................................................1611.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................TATGACACCGTCATCCGCG191.000.00-------------------------------------------------------------1.00-----------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTT....................................................2211.0013.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGC......................................................................................1911.001.00---------------------------------------------------------------------------------------------------------1.00---------------------------------------------
...............................................CAGGTGAGCGTCGCCGGT........................................................................................................................181.000.00------------------------------------------------------------------------------------------------1.00------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCTAA.................................................2511.003.00------------------------------------------1.00------------------------------------------------------------------------------------------------------------
...........AATCTACTGGTCTGACC.............................................................................................................................................................1711.001.00------------------------------------------------------------1.00------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGA......................................................................................2011.0019.00------1.00------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................CAGGTGAGATGAGGGCTAAGT.................................................................................211.000.00------1.00------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAT..................................................................................2411.0085.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTCT..................................................................................2411.0085.00----------------------------------------------------1.00--------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATG..................................................................................2411.0085.00-------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAG..................................................................................2411.0085.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTTTTT.................................................................................231.000.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCATT...................................................................................2311.0019.00---------------1.00---------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCCATT................................................................................2611.0010.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................AGCTTGACAGAGCCCACGGCGTCTCTTCCC...............301.000.00-----------------------------------------------------------------------------------------------------------------------------------1.00-------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAGA..................................................................................2411.0085.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAGT..................................................................................2411.0085.00---------------1.00---------------------------------------------------------------------------------------------------------------------------------------
..........GAATCTACTGGTCTGGGCT............................................................................................................................................................191.000.00------------------1.00------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCCG....................................................................................2111.001.00--------------------------------1.00----------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTG........................................................7911.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------------------------
.....................TCTGACCTGTCCCAGAGAATGATCTGC.........................................................................................................................................2711.001.00-------------------------------------------------------------------------------------------------1.00-----------------------------------------------------
............................................................................TGGCCCGCAGGTGAGATGAGGAA......................................................................................231.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------
......AATAGAATCTACTGGTCTGACCT............................................................................................................................................................2311.001.00---------------------------------------------------------------------------------------------------------------------------------1.00---------------------
...............................................................................CCCGCAGGTGAGATGAGGCCT.....................................................................................2111.0034.00--------------------------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCAT..................................................2411.009.00--------------------------------------------1.00----------------------------------------------------------------------------------------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAG................................................................................................................2311.001.00-------------------------------------------------------------------------------------------1.00-----------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTTAA..................................................................................2311.001.00---------------------------------------------------------------------------------------------------------------------------------------1.00---------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCAA..................................................2411.009.00-------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAAAAA......................................................................................2011.001.00-------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTAA..................................................................................2411.0085.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTGT...................................................................................2311.0085.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTAGA..................................................2411.0013.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCCAA.................................................................................2411.009.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGC......................................................................................1811.001.00------------------------------------------------------------------1.00------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATA..................................................................................2411.0085.00-----------------------------------------------------------------------------1.00-------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCATA.................................................2511.009.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCT.....................................................................................2011.001.00-------------------------------------------------------------------1.00-----------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCAA..................................................................................2411.005.00-----------------------------------------------------1.00-------------------------------------------------------------------------------------------------
.........AGAATCTACTGGTCT.................................................................................................................................................................1570.570.57------------------------------------------------------------0.43----------------------------------------------------------------------------------------0.14-
...............................................................................................................TGCCCTTCTCTCCTCCTGCCAAA...................................................2320.502.00-----------------------------------------------------------0.50-------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCGA....................................................2220.502.00-------------------------------------------------------------------------------------------------------------------------------------------------0.50-----
................................................................................................................GCCCTTCTCTCCTCCTGC.......................................................1840.250.25--------------------------------------------------------------------------------------------------------------------------------------------------0.25----
.........................................................................................................................................................................TATGACACCGTCA...1370.140.14-------------------------------------------------------------0.14-----------------------------------------------------------------------------------------
......AATAGAATCTACTGG....................................................................................................................................................................15100.100.10------------------------------------------------------------------------------------------------------------------------------------------------------0.10

Antisense strand
GCCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAGGTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTGCCTCAGCACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCA
..................................................................................(((((.((((.((((((((........)).)))))).))))..))))).......................................................
..........................................................................75..........................................................135................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038863(GSM458546)
MM603. (cell line)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)
SRR038857(GSM458540)
D20. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029124(GSM416753)
HeLa. (hela)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR029127(GSM416756)
A549. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189787SRR390723(GSM850202)
total small RNA. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037938(GSM510476)
293Red. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM956925Ago2PAZ(GSM956925)
cell line: HEK293 cell linepassages: 15-20ip . (ago2 cell line)
GSM359189(GSM359189)
HepG2_2pm_3. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040018(GSM532903)
G701N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR343334SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.....................................................................GCAGCCTTGGCCCGCAG................................................................................................... 172.000.00-----------------2.00-------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................CCAGCTTGACAGAGCCGG............................. 181.000.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................TCCTCCTGCCTCAGCAC............................................... 1701.001.00---------1.00---------------------------------------------------------------------------------------------------------------------------------------------
.............................GTCCCAGAGAATGATGAGA......................................................................................................................................... 191.000.00--------------------------------------1.00----------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................GCGTCTCTTCCTATGACACCG...... 2111.001.00-----------------------------------------------------------------------------------------------------------------------1.00-------------------------------
....................................................................TGCAGCCTTGGCCCGCA.................................................................................................... 1711.001.00------------------------------------------------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................CGGCGTCTCTTCCTAACC........... 181.000.00--------------------------1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................................................................GATGCCCTTCTCTCCTGA.......................................................... 181.000.00---------------------------------------------------------------------------1.00---------------------------------------------------------------------------
...............................................................................................................................................................CGTCTCTTCCTATGAC.......... 1630.670.67--------------------------------------------------------------------------------------------------------------------------------------------0.67----------
...............................................................................................................................................................CGTCTCTTCCTATGA........... 1550.400.40---------------------------------------------------------------------------------------------------------------------------------------------------0.200.20--