ID: hsa-mir-6872
GENE: SEMA3B(5)
chr3:50310529-50310778+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
BRAIN 		(6)
BREAST 		(20)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(6)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGCTTCTTGCCTCGCAGGCCCTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGAC
.................................................................................................................................................((((..(((((((((.((.(((......)))..)).)))))))))..))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040030(GSM532915)
G013N. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................TCTCGCATCAGGAGGCAAGG.......................................................................................20117.0017.007.003.001.001.00-----------2.00--------------1.00-----1.00------------------1.00------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCC.....................................................................................22110.0010.001.006.00-----1.00-----------------------------1.00--1.00---------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGA......................................................................................2117.0017.00----7.00---------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGC......................................................................................2117.007.002.00------1.00-1.00--1.00-------------------------------1.00--1.00--------------
...............................................................................................................................................................................................................GTTTGTCAAGGTATTTTGGAT......................2116.006.00---6.00----------------------------------------------------------
......................................................................................................................................................................................................................................CGGAGAGCGAGAACCCAGA.1915.005.00-----5.00--------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCA....................................................................................2315.005.001.00-------3.00-1.00---------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCT....................................................................................2315.0010.00--3.00------------------------------1.001.00---------------------------
..................................................................................................................................................................................................................TGTCAAGGTATTTTGGATCCCGGA................2414.004.00--4.00-----------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCAT....................................................................................2313.007.00-1.00-----1.00------------------------------------------1.00-----------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTT...................................................................................2413.0010.00--2.00--------------------------------------1.00--------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCAA....................................................................................2313.007.00-----------1.00--1.00----------------1.00------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAG........................................................................................1913.003.00------1.00--1.00-------1.00--------------------------------------------
....................................................................................................................................................................................................................................CCCGGAGAGCGAGAACCC....1812.002.00-------------2.00------------------------------------------------
...........................................................................................................................................................................................................................ATTTTGGATCCCGGAGAGCGAGAACCCA...2812.002.00------1.00--------------------1.00----------------------------------
............................................................................................................................................................................................................................TTTTGGATCCCGGAGAG.............1712.002.00------------------2.00-------------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGA.................................................2112.002.00------1.00---------------------------------------1.00---------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCAT...................................................................................2412.005.00-----------------------1.001.00-------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGT.................................................212.000.00--------------1.00-1.00---------------------------------------------
.................................................................................................................................................................................CCCATGCCTCCTGCCGCGGTC....................................................2112.002.00--1.00------------------------------------------------1.00----------
................................................................................................................................................CTCGCATCAGGAGGCAAGGC......................................................................................2012.002.002.00-------------------------------------------------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGGTCAGT.................................................222.000.00-----------------1.00------1.00-------------------------------------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGCA.....................................................................................2312.001.00-2.00------------------------------------------------------------
..................................................................................GTCAGACACTGTGATCCCGG....................................................................................................................................................2011.001.00-------------------1.00------------------------------------------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGCAA....................................................................................2411.001.00-1.00------------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGTAG....................................................................................2311.0017.00------1.00-------------------------------------------------------
.............................................................................................................................................................................................................................TTTGGATCCCGGAGAGCGAGAACC.....2411.001.00-----------------------1.00--------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAAAT................................................221.000.00---------------------------------------------1.00----------------
..........................................................................................................................................................................................................................TATTTTGGATCCCGGAGAGC............2011.001.00------------------------------------------------------1.00-------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGC......................................................................................2211.001.00-------------------1.00------------------------------------------
......................................................................................................................................................................................................................AAGGTATTTTGGATCCCGGAGAGCG...........2511.001.00----------------------1.00---------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCA.....................................................................................2211.007.00-------1.00------------------------------------------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGG......................................................1711.001.00------------1.00-------------------------------------------------
..................................................................................................................................................................................................................TGTCAAGGTATTTTGGATCCCGGAGAG.............2711.001.00-------------------------------------------1.00------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCAGGACC...............................................................................2811.001.00-----------1.00--------------------------------------------------
.......................................................................................................................................................................................CCTCCTGCCGCGGTCGCCA................................................191.000.00-------------------------1.00------------------------------------
....................................................................................................................................................................................................................................CCCGGAGAGCGAGAACCCAGA.2111.001.00---1.00----------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTATT.................................................................................2611.0010.00--------------------------------1.00-----------------------------
.........................................................................................................................................................................................................................GTATTTTGGATCCCGGAGAGCG...........2211.001.00-----------------------------1.00--------------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCCAT...................................................................................231.000.001.00-------------------------------------------------------------
..................................................................................................................................................................................CCATGCCTCCTGCCGCGGTCAGA.................................................2311.001.00--------------------1.00-----------------------------------------
........................................................CTGGACATGGTGCTAGAGGT..............................................................................................................................................................................2011.001.00----------------1.00---------------------------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCCT....................................................................................221.000.001.00-------------------------------------------------------------
.................................................................................................................................................TCGCATCAGGAGGCAAGG.......................................................................................1811.001.001.00-------------------------------------------------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGGTCAGA.................................................2211.001.00------------------------------------------------1.00-------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGTT................................................221.000.00----------------------1.00---------------------------------------
......................................................................................................................................................................................................................AAGGTATTTTGGATCCCGGAGA..............2211.001.00---1.00----------------------------------------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCAT....................................................................................2211.002.00-------------------------------------------------1.00------------
...............................................................................................................................................................................................................................TGGATCCCGGAGAGCGAGAACC.....2211.001.00----------1.00---------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGAA.....................................................................................2211.0017.00--------------------------------------1.00-----------------------
.....................................................................................................................................................................................................................CAAGGTATTTTGGATCC....................1711.001.00---------1.00----------------------------------------------------
.....................................................................................................................................AGCGCGTGGGTCTCGCATCAGGAGGCA..........................................................................................2711.001.00------------------------------------------1.00-------------------
.....................................................................TAGAGGTTGGGTGGTCAGACACTG.............................................................................................................................................................2411.001.00---1.00----------------------------------------------------------
...............................................................................................................................................................................................................GTTTGTCAAGGTATTTTGGATCCCGGAG...............2811.001.00---------------------1.00----------------------------------------
......................................................................................................................................................................................GCCTCCTGCCGCGGTCGCCA................................................201.000.00-----------------------------------------------------1.00--------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTA...................................................................................2411.0010.00---------------------------------------1.00----------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGAAA....................................................................................2311.0017.00-1.00------------------------------------------------------------
...............................................GAGCGCCAACTGGACATGG........................................................................................................................................................................................1911.001.00----------------------------------------------------1.00---------
..........................................................................................................................................................................................................................TATTTTGGATCCCGGAGAGCGAGAAC......2611.001.00---1.00----------------------------------------------------------
.......................................................................GAGGTTGGGTGGTCAGA..................................................................................................................................................................1711.001.00---------------------1.00----------------------------------------
..............................................................................................................................................................................................................................TTGGATCCCGGAGAGCG...........1711.001.00----------------------------1.00---------------------------------
.......................................................ACTGGACATGGTGCTAGAAGTC.............................................................................................................................................................................221.000.001.00-------------------------------------------------------------
..................................................................................................................................................................................................................................ATCCCGGAGAGCGAGCCGG.....191.000.00-----------------------------------1.00--------------------------
...................................................................................................................ACTACGGGAAGGGGA........................................................................................................................1520.500.50---------------------------------------------------------0.50----
......................................................................................................................................................................................................................................CGGAGAGCGAGAACC.....1520.500.50----------0.50---------------------------------------------------
.............................................................................................................................................................................................GCCGCGGTCAGAGCC..............................................1530.330.33-----------------------------------------------------------0.33--
...............................................................................................ATCCCGGGTGCTGT.............................................................................................................................................1460.330.33------------------------------------------------------------0.33-
...................................................................................................CGGGTGCTGTGCCCG........................................................................................................................................1530.330.33----------------------------------------------------------0.33---
...................................TCGGTCCGCGCA...........................................................................................................................................................................................................1250.200.20------0.20-------------------------------------------------------
...................................................................................................................................................................................................................................TCCCGGAGAGCGA..........1370.140.14-------------------------------------------------------------0.14
............................................................................................................................................................................................................................................GCGAGAACCCAGAC1490.110.11---------------------------0.11----------------------------------

Antisense strand
CTGCTTCTTGCCTCGCAGGCCCTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGAC
.................................................................................................................................................((((..(((((((((.((.(((......)))..)).)))))))))..))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040030(GSM532915)
G013N. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............CGCAGGCCCTGATCCTGA........................................................................................................................................................................................................................... 181.000.00-------------------------1.00------------------------------------
.........................................................................................................................................................................CCCGCTGACCCATGCCTCA.............................................................. 191.000.00--------------------------------------------------------1.00-----
..........................................................................................CTGTGATCCCGGGTGCT............................................................................................................................................... 1711.001.00--------------------------1.00-----------------------------------
..........................................................................................CTGTGATCCCGGGT.................................................................................................................................................. 1450.200.20--------------------------0.20-----------------------------------