ID: hsa-mir-6856
GENE: FUBP3(10)
chr9:133501551-133501800+


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(5)
B-CELL 		(5)
BRAIN 		(3)
BREAST 		(24)
CELL-LINE 		(1)
CERVIX 		(3)
FIBROBLAST 		(4)
HEART 		(2)
HELA 		(2)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ACAGGTCCTCCCCAGATACACCTGTGATCGGTGTTAATTCTGGCTTGAAAGAGCCCTTCAGAATGGGAAGTGTGGAAAGGTGCTAGGTTCTGATGGGTGGCATTGATTACATCCTGTCACTTAACCTCCTCCCTGGAAAAGAGAGGAGCAGTGGTGCTGTGGCAGTGGCAGAGGTCGCTACAGCCCTGTGATCTTTCCAGGAAAGAGACGGCTTTGGAGGCCTGGCAGCAGCCAGAGGAAGAGGTCGTGG
.....................................................................................................................................((((...((((...(((..((.((((((((...(((....))))))))))))))))..))))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786GSM416733(GSM416733)
HEK293. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189784TAX577589(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040008(GSM532893)
G727N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGG........................................................................................24117.0017.003.00---1.00---2.002.00--3.001.00--1.001.00-1.00----------------1.00-----1.00-----------------------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCTGTGG........................................................................................2318.008.00-------2.00-1.00-----2.00---1.00-------------1.00------------1.00-------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCAGA.................................................2317.006.002.00--------------------1.00-2.00------1.00---1.00-------------------------------
..............................................................................................................................................................................TCGCTACAGCCCTGTGATCTTTCCAG..................................................2616.006.00----------3.00---------------------------1.00----------1.00----1.00-----------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCAG..................................................2216.006.00---1.00-2.00------------1.00--1.00---1.00----------------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGGA.......................................................................................2514.0017.00----2.00--------1.00-----------------------------1.00----------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTAA........................................................................................243.000.00------3.00-----------------------------------------------------------
..........................................................CAGAATGGGAAGTGTGGAAAGGTG........................................................................................................................................................................2412.002.00-2.00----------------------------------------------------------------
...................................................................................................................................................................................ACAGCCCTGTGATCTTTCCA...................................................2012.002.00---1.00-----------------------1.00--------------------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCA...................................................2112.002.00---------------------------------------1.00-----------1.00--------------
.........................................................................................................................................................................................................................AGGCCTGGCAGCAGCCAGAGGAAGAGGTCGTGG3312.002.00--2.00---------------------------------------------------------------
...............................................................................................................................................................................................................................GGCAGCAGCCAGAGGAAG.........1812.002.00----------------------2.00-------------------------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCC....................................................2012.002.00-----------1.00-----------------------------------------1.00------------
...................................................................................................................................................................................ACAGCCCTGTGATCTTTCCAG..................................................2112.002.00---2.00--------------------------------------------------------------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCTGTGGTAT.....................................................................................2612.008.00-----2.00------------------------------------------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCATT.................................................2312.002.00-----------2.00------------------------------------------------------
......................................................................................................................................................................................................................TGGAGGCCTGGCAGCAGCCAGAGGAAG.........2712.002.00-------------------------------1.00-------------1.00--------------------
......................................................................................................................................................................................................AGGAAAGAGACGGCTTTGGAGG..............................2211.001.00--1.00---------------------------------------------------------------
...................................................................................................................................................................................ACAGCCCTGTGATCTTTCCAGA.................................................2211.002.00-------1.00----------------------------------------------------------
.....................................................................................................................................TGGAAAAGAGAGGAGCAGTGGTGCT............................................................................................2511.001.00----------------------------------------------------------1.00-------
.......................................................................................................................................................................................................GGAAAGAGACGGCTTTGGAG...............................2011.001.00-----------------------------------------1.00------------------------
..........................................................CAGAATGGGAAGTGTGGCT.............................................................................................................................................................................191.000.00------------------------1.00-----------------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGGTT......................................................................................2611.0017.00--------------------------------1.00---------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGCGGC.......................................................................................251.000.00-----------------------------1.00------------------------------------
...........................................CTTGAAAGAGCCCTTCAGAA...........................................................................................................................................................................................2011.001.00------------------------------------------------1.00-----------------
....................................................................................................................................CTGGAAAAGAGAGGAGCAGT..................................................................................................2011.001.00-1.00----------------------------------------------------------------
.............................................................................................................................................................................................................AGACGGCTTTGGAGGCCTGGCAGCAGC..................2711.001.00--------------1.00---------------------------------------------------
..............................................................................................................................................................................TCGCTACAGCCCTGTGATCTTTCCAGA.................................................2711.006.00------------------1.00-----------------------------------------------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCGT...........................................................................................201.000.00----------------------------1.00-------------------------------------
...........................................................................AAAGGTGCTAGGTTCTGCAG...........................................................................................................................................................201.000.00-------------------------------------1.00----------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCACT......................................................181.000.00-----------------------------------------------1.00------------------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCTGTGGC.......................................................................................2411.001.00-----------------1.00------------------------------------------------
..................................................................................................................................................AGCAGTGGTGCTGTGGAACG....................................................................................201.000.00--------------------1.00---------------------------------------------
..................CACCTGTGATCGGTGTTAATTCTGGC..............................................................................................................................................................................................................2611.001.00------------------------------------------------------------1.00-----
..............................................................ATGGGAAGTGTGGAAATTT.........................................................................................................................................................................191.000.00-----------------------------------1.00------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTG.........................................................................................2311.001.00--------------------------------------------------1.00---------------
...............................................AAAGAGCCCTTCAGAATGGGAAGTGTGGAAAGGTG........................................................................................................................................................................3511.001.00---------------------------------------------------------1.00--------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGGC.......................................................................................2511.001.001.00-----------------------------------------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGGT.......................................................................................2511.0017.00--------------------------------------------1.00---------------------
........................................................................................................................................AAAAGAGAGGAGCAGTGGTGCTGCGGC.......................................................................................271.000.00--------------1.00---------------------------------------------------
.........................................................................................................................................................................................................AAAGAGACGGCTTTGGAGG..............................1911.001.00----1.00-------------------------------------------------------------
.................................................................................................................................................................................................................GGCTTTGGAGGCCTGGCAGCAGCCAGAGGAAG.........3211.001.00--1.00---------------------------------------------------------------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCTGTGGA.......................................................................................2411.008.00-------------------------------------------------------1.00----------
.........................................................................................................................................................................................................AAAGAGACGGCTTTGGTAAG.............................201.000.00----------------------------------------1.00-------------------------
..........................................................CAGAATGGGAAGTGTGGAT.............................................................................................................................................................................191.000.00------------------------1.00-----------------------------------------
.......................................................................................................................................................................................................GGAAAGAGACGGCTTTGGA................................1911.001.00-1.00----------------------------------------------------------------
.........................................................................................................................................................................................................................................AGAGGAAGAGGTCGTGA171.000.00----------------1.00-------------------------------------------------
.........................................................................................................................................................................................................................AGGCCTGGCAGCAGCCAGAGGAAG.........2411.001.00-----------------------------------------------------------1.00------
.....................................................................................................................................................................................................CAGGAAAGAGACGGCTTTGGA................................2111.001.00--1.00---------------------------------------------------------------
..............................................................................................................................................................................TCGCTACAGCCCTGTGATCTTA......................................................221.000.00----------------------------------------------------1.00-------------
......................................................................................................................................................................................................AGGAAAGAGACGGCTTTGGA................................2011.001.00--------------------1.00---------------------------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCAGT.................................................2311.006.00--------------------------------------------------------1.00---------
......................................................................................................................................................................................................AGGAAAGAGACGGCTTTGGAGGC.............................2311.001.00-1.00----------------------------------------------------------------
................................................................................................................................................................................................................CGGCTTTGGAGGCCTGGCAGCAGCCAGAGG............3011.001.00--------1.00---------------------------------------------------------
.........................................................................................................................................................................................................................................AGAGGAAGAGGTCGTGG1740.250.25--------------------------0.25---------------------------------------
...........................................................................................................................................................................................................................................AGGAAGAGGTCGTGGTAT1860.170.17-------------------------------------------------------------0.17----
...........................................................................................................................................................................................................................................AGGAAGAGGTCGTGGGT1760.170.17---0.17--------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGAAGAGGTCGTGG1560.170.17---------------------------------------------------------------0.17--
................................................................................................................................CTCCCTGGAAAAGAGA..........................................................................................................16100.100.10-----------------------------------------------------------------0.10

Antisense strand
ACAGGTCCTCCCCAGATACACCTGTGATCGGTGTTAATTCTGGCTTGAAAGAGCCCTTCAGAATGGGAAGTGTGGAAAGGTGCTAGGTTCTGATGGGTGGCATTGATTACATCCTGTCACTTAACCTCCTCCCTGGAAAAGAGAGGAGCAGTGGTGCTGTGGCAGTGGCAGAGGTCGCTACAGCCCTGTGATCTTTCCAGGAAAGAGACGGCTTTGGAGGCCTGGCAGCAGCCAGAGGAAGAGGTCGTGG
.....................................................................................................................................((((...((((...(((..((.((((((((...(((....))))))))))))))))..))))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786GSM416733(GSM416733)
HEK293. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189784TAX577589(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040008(GSM532893)
G727N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................................CGCTACAGCCCTGTG............................................................ 1520.500.50-------------------------0.50----------------------------------------
.............................................TGAAAGAGCCCTTCA.............................................................................................................................................................................................. 1560.170.17--------------------------------------------------------------0.17---
..............................................GAAAGAGCCCTTCAG............................................................................................................................................................................................. 1590.110.11----------------------------------------------------------------0.11-