ID: hsa-mir-6849
GENE: CPSF1(29)
chr8:145625621-145625797-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(25)
CELL-LINE 		(1)
HEART 		(2)
HELA 		(5)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
XRN.ip

Sense strand
CAGCCTGCCCTTTGACTGCACCCAGGCTCTGGCTGTGCCCAAGCCCATAGGTGTGTGTCCTGGGAGTGGATAGGGGAGTGTGTGGAGAGAGCACTGAGCCTGCCCACCAGCCTGTGTCCACCTCCAGGTGGGGTGGTGGTGTTTGCCGTCAACTCGCTGTTGTACCTGAACCAGAGC
...........................................................((((..(((((((.(((..((.((((..((.((.....))))..)))))).))).)))))))..))))..................................................
..........................................................59..................................................................127................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189784SRR189787SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189786SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR038860(GSM458543)
MM426. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR037938(GSM510476)
293Red. (cell line)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189783SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGT.................................................23131.0014.005.00---1.005.00-4.00---2.00--1.00-2.00-1.001.00-------1.00-------1.00--1.00-1.00---1.001.001.001.00---------------1.00-
...............................................................GAGTGGATAGGGGAGTGTGTGGA...........................................................................................23114.0014.00-12.00-1.00---------1.00---------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAG..................................................22114.0014.009.00-----1.00--1.00----------------------1.00---------------1.00-------1.00--------
................................................................AGTGGATAGGGGAGTGTGTGGAT..........................................................................................2319.007.00--3.005.00-----------------------------------1.00-------------------------
................................................................AGTGGATAGGGGAGTGTGTGGA...........................................................................................2217.007.00--1.003.00--------1.001.00-1.00-------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGTA................................................2416.0014.00--------5.00-------------------------1.00------------------------------
................................................................AGTGGATAGGGGAGTGTGTGGAGAA........................................................................................2514.001.00--4.00--------------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCATT.................................................2314.001.003.00------------------------------1.00---------------------------------
................................................................AGTGGATAGGGGAGTGTGT..............................................................................................1914.004.00----4.00------------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGA.................................................2314.0014.00----3.00-------------------------------------------------1.00----------
.........................................................................................................ACCAGCCTGTGTCCACCCCAG...................................................214.000.00------4.00----------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGC.................................................2313.0014.00----------2.00-----------------------------------------1.00------------
...............................................................GAGTGGATAGGGGAGTGTGGGGA...........................................................................................233.000.00-3.00---------------------------------------------------------------
..........................................................................................................CCAGCCTGTGTCCACCTCCAGT.................................................223.000.002.00-1.00--------------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTACAG..................................................222.000.001.00----1.00-----------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCC....................................................2012.002.002.00----------------------------------------------------------------
......................................................................................................CCCACCAGCCTGTGTCCACCTTT....................................................2312.001.00--------------------1.00----1.00---------------------------------------
...........................................................CTGGGAGTGGATAGGGGAGTGTGT..............................................................................................2412.002.00--2.00--------------------------------------------------------------
.............................................................................................................................AGGTGGGGTGGTGGTGTTTGC...............................2112.002.00-----------------2.00-----------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTTCAG..................................................221.000.001.00----------------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGTC................................................2411.0014.00-------1.00---------------------------------------------------------
................................................................AGTGGATAGGGGAGTGTGTGAA...........................................................................................221.000.00------------------------------------------1.00----------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAAT.................................................2311.001.00-----------------------------------------1.00-----------------------
..............................................................GGAGTGGATAGGGGAGTGTGTGG............................................................................................2311.001.00-----------------------1.00-----------------------------------------
................................................................AGTGGATAGGGGAGTGTGTGGAAT.........................................................................................2411.007.00-----------1.00-----------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCATTTC...............................................2511.001.00----------1.00------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCA...................................................2111.001.00-----------------------------------------------------------1.00-----
.........................................................................................................ACCAGCCTGTGTCCACCTCCATTA................................................2411.001.001.00----------------------------------------------------------------
......................................................................................................CCCACCAGCCTGTGTCCACC.......................................................2011.001.00-------------------------------------1.00---------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCATTTT...............................................2511.001.00--------------------------1.00--------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTTCAA..................................................221.000.001.00----------------------------------------------------------------
..........................................................CCTGGGAGTGGATAGGGGAGTGTGTGGT...........................................................................................281.000.00---------------------1.00-------------------------------------------
......................................................................................................CCCACCAGCCTGTGTCCACCTCT....................................................231.000.00-------------------------------------------------1.00---------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGTAT...............................................2511.0014.00-----------------------------------------------------1.00-----------
.......CCCTTTGACTGCACCCAGGCTCTGGCTGTG............................................................................................................................................3011.001.00-----------------------------1.00-----------------------------------
........................................................................................................CACCAGCCTGTGTCCACCTCCATT.................................................241.000.00------------------------------------------------------------1.00----
.........................................................................................................ACCAGCCTGTGTCCACTTCC....................................................201.000.001.00----------------------------------------------------------------
................................................................................................................................................................TGTACCTGAACCAGAGCTTC201.000.00---------------------------------------------------------1.00-------
.......................................................................................................CCACCAGCCTGTGTCCACC.......................................................1911.001.00------------------------1.00----------------------------------------
...........................................................CTGGGAGTGGATAGGGGAG...................................................................................................1911.001.00------------------1.00----------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGTT................................................2411.0014.00-------------------------------------------1.00---------------------
................................................................AGTGGATAGGGGAGTGTGTGG............................................................................................2111.001.00-------------------------------------------------------1.00---------
................................................................AGTGGATAGGGGAGTGTGTGA............................................................................................211.000.00---------------------------------1.00-------------------------------
................................................................AGTGGATAGGGGAGTGTGTGGAGA.........................................................................................2411.001.00---------1.00-------------------------------------------------------
.............................................................................................................................AGGTGGGGTGGTGGTGGGTG................................201.000.00------------------------------1.00----------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTC.....................................................1911.001.00--------------------------------------------------------------1.00--
...................................................................GGATAGGGGAGTGTGTGGA...........................................................................................1911.001.00---------------1.00-------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAC..................................................2211.001.00------1.00----------------------------------------------------------
......................................................................................................CCCACCAGCCTGTGTCCACCT......................................................2111.001.00----------------------------------------------------------1.00------
.......................................................................................................................................................ACTCGCTGTTGTACC...........1511.001.00------------1.00----------------------------------------------------
...............................................................GAGTGGATAGGGGAGTGTGCGGA...........................................................................................231.000.00-1.00---------------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGTAA...............................................2511.0014.00-------------------------------------------------------------1.00---
.........................................................................................................ACCAGCCTGTGTCCACCTCCAGAAAT..............................................2611.0014.00--------------------------------------------------1.00--------------
................................................................AGTGGATAGGGGAGTGTGTGGGG..........................................................................................2311.001.00---------1.00-------------------------------------------------------
.........................................................................................................ACCAGCCTGTGTCCACCTCGAT..................................................2211.001.001.00----------------------------------------------------------------
................................................................AGTGGATAGGGGAGTGTGTGGAAA.........................................................................................2411.007.00---1.00-------------------------------------------------------------
......................................................................TAGGGGAGTGTGTGGAG..........................................................................................1730.330.33-------------------0.33---------------------------------------------
......................................................................................GAGAGCACTGAGCCTG...........................................................................1670.140.14----------------------------------------------------------------0.14

Antisense strand
CAGCCTGCCCTTTGACTGCACCCAGGCTCTGGCTGTGCCCAAGCCCATAGGTGTGTGTCCTGGGAGTGGATAGGGGAGTGTGTGGAGAGAGCACTGAGCCTGCCCACCAGCCTGTGTCCACCTCCAGGTGGGGTGGTGGTGTTTGCCGTCAACTCGCTGTTGTACCTGAACCAGAGC
...........................................................((((..(((((((.(((..((.((((..((.((.....))))..)))))).))).)))))))..))))..................................................
..........................................................59..................................................................127................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189784SRR189787SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189786SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR038860(GSM458543)
MM426. (cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR037938(GSM510476)
293Red. (cell line)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189783SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
................................................................................................AGCCTGCCCACCAGCCTGGTG............................................................ 211.000.00----------------------1.00------------------------------------------
..............................................................................................................................GGTGGGGTGGTGGTGTTCAGT.............................. 211.000.001.00----------------------------------------------------------------
.................................................................................................................GTGTCCACCTCCAGGTCT.............................................. 181.000.00---------------------------------------------------1.00-------------
................................................................................................AGCCTGCCCACCAGCCTGTGTC........................................................... 2211.001.00--------------1.00--------------------------------------------------
...................................................................................................CTGCCCACCAGCCTGTC............................................................. 171.000.00----------------------------1.00------------------------------------