ID: hsa-mir-6844
GENE: TATDN1(5)
chr8:125520706-125520893-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(6)
B-CELL
(41)
BREAST
(47)
CELL-LINE
(7)
CERVIX
(3)
FIBROBLAST
(7)
HEART
(9)
HELA
(3)
LIVER
(9)
OTHER
(21)
SKIN
(2)
XRN.ip

Sense strand
AAAATTACCAATGTTTCTTCATTGTCGAAACTCACATGCTGAATTTTTGGGTGAGTTAAAACCAAAGTCTCATTCAGAACTTAAGAATTTTGTAGAAATCAAGCTATTTGCTAAAAGTTCTTTGTTTTTAATTCACAGACATAATGAAAAGAAATAGAGATCGGTGTGTAGGGGGAGTGGTAAGTATA
............................................................................(((.((((((((.....((((....(((.....))).....))))..)))))))))))......................................................
............................................................................77...........................................................138................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189785SRR037943(GSM510481)
293DcrTN. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189786SRR343335SRR037936(GSM510474)
293cand1. (cell line)
SRR343334SRR029131(GSM416760)
MCF7. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR189787SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029129(GSM416758)
SW480. (cell line)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)
GSM956925PAZD5SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM532886(GSM532886)
G850T. (cervix)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577745(Rovira)
total RNA. (breast)
SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR029124(GSM416753)
HeLa. (hela)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................TTCTTTGTTTTTAATTCACAG..................................................2111171.001171.001001.00102.00-20.001.00--1.00-9.00--7.00----1.001.00----3.001.002.00---2.00--1.00-1.001.00---------2.00----1.00-----1.00------1.00-2.001.001.00--------1.00-------------1.001.00---------1.00-----------1.00----------1.00--------1.00----1.00--------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGA.................................................221755.00755.00414.0030.0086.0014.0014.00-20.0016.0012.005.0014.008.004.009.00-12.001.002.00-1.003.00--2.006.00-6.002.001.001.002.001.001.002.00-2.002.001.002.001.001.00-1.003.00-----1.001.001.001.001.001.00-1.002.00-2.001.002.002.001.002.00-1.00-1.002.002.001.00-1.00-1.00----1.00--1.001.00--1.00-----1.001.00--1.00--1.00-1.00--1.001.00-1.00-----1.00-1.001.001.001.00-1.00-1.00-------1.00--1.001.00----1.00-1.001.00---------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGT.................................................221303.001171.00222.0016.00-4.005.004.003.002.00-2.00--1.004.00---2.00-1.003.00--1.00----3.00-3.00-2.002.001.00--1.001.001.001.00------------1.00-------------1.001.00---1.00------1.00-1.00---1.00--1.001.00--1.00-----------1.00--1.00-1.00--1.00--1.00------1.00-----1.00----------1.00-------------
.....................................................................................................................TTCTTTGTTTTTAATTCACA...................................................20194.0094.0081.001.00-1.00-1.00--------------1.00----3.00---1.00-1.00---1.00-1.00----------------------------------------1.00-------------------------------1.00------------------------------------------
.................................................................................TAAGAATTTTGTAGAAATCAAGC....................................................................................23134.0034.00-----18.00--4.00--------3.00-2.00--2.00---------------------3.00-2.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGC.................................................22126.001171.0010.00--2.00------------11.00--------------1.00-------------------1.00--------1.00--------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAA..................................................21119.0094.0017.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACAG..................................................22117.0017.0014.00-------1.00-----1.00------------1.00-----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACAGA.................................................23112.0012.003.00-8.00---------------------------------------1.00--------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCATTCAGAACTTAAGAATTTTGTAGAAATCAAGCT...................................................................................55111.0011.00------------------10.00-------------------------------------------------------1.00------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAT..................................................21111.0094.0010.00---------------------------------------------------------------------------------1.00----------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACATA.................................................2218.0094.004.00-1.00-1.00-------1.00---------------1.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGCATC..............................................2517.001171.00---------------------7.00-----------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGT........................................................................................................................1816.006.00-----------4.00----------------------------------------1.00------------------------------------------------------------------------------------1.00---------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGAG................................................2316.00755.00----------------------5.00-------------------------------------------------------------------------1.00--------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCCCAG..................................................213.000.003.00--------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................TCTTTGTTTTTAATTCACAG..................................................2013.003.002.00----------------------1.00---------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCAC....................................................1923.003.001.50--0.50---------------0.50----------------------------------------------------------------------------------------------------------------------------------0.50--
....................................................................................................................GTTCTTTGTTTTTAATTCACA...................................................2113.003.002.00------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
.................................................................................TAAGAATTTTGTAGAAATCAAGCTATTTGCTAAAAG.......................................................................3613.003.00------------------------------------------------2.00------1.00-------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTC.....................................................................................................................2113.003.00------------------------------------------1.00--------------------------------------------------------1.00------------------------------1.00----------------------
.................................................................................................................................................................CGGTGTGTAGGGGGACCAG........1922.000.50--------------------------------------------------------------------------------------------------1.00----------------------------1.00-------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGTA................................................2312.001171.001.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCATTCA................................................................................................................2612.002.00---------------------------------------------------------------------------------------------------------------1.00--------------------1.00--------------------
...........................................................................................................................................................AGAGATCGGTGTGTAGGGGGAGTGG........2512.002.00--------------2.00------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGACA...............................................2412.002.00-------2.00-------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGG.................................................2212.001171.002.00--------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACAC..................................................2212.003.002.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAC..................................................2112.0094.002.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................CGGTGTGTAGGGGGAGTGGT.......2012.002.00--------------2.00------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................GAAATAGAGATCGGTGTGTAGGGGGAGTGGTGC.....332.000.00--------------2.00------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCATAG..................................................2152.000.401.800.20-------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACAGT.................................................2312.0017.001.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................AAATAGAGATCGGTGTGTAGGG...............2212.002.00-------------------1.00--------------1.00----------------------------------------------------------------------------------------------------------------------
......................................................................................................................TCTTTGTTTTTAATTCACAGT.................................................2112.003.00--------------------2.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACACA.................................................2212.0094.002.00--------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................TTTGTTTTTAATTCACAG..................................................1831.331.331.00----------------0.33---------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................GATCGGTGTGTAGGGGGA............1811.001.00-----------------------------------------1.00---------------------------------------------------------------------------------------------------------------
..................................................................................AAGAATTTTGTAGAAATCAAGC....................................................................................2211.001.00----------------------------------------------------------------------------------------------------------------------------------------1.00----------------
.....................................................................................................................TTCTTTGTTTTTAATTTACA...................................................201.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AGAAATAGAGATCGGTGTGTAGGGGG.............2611.001.00---------------------------------------------1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCGCAG..................................................211.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................GAGATCGGTGTGTAGGGGGAGT..........2211.001.00--------------------------------------------------------------------------------------1.00------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCATAGA.................................................2251.000.400.400.20------------------------0.20---------------------------------------------------------------------------------------------------------------------0.20--------
...........................................................................................................................................................AGAGATCGGTGTGTAGGGGGA............2111.001.00--------1.00------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACATT.................................................2311.003.00----1.00----------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGGGGGAGTGG........2811.001.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACGG..................................................2121.003.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATCTCG....................................................201.000.00------------------------------------------------------------------------------------------------------------------------------1.00--------------------------
..................................................................................................................................................AAAAGAAATAGAGATCGGA.......................191.000.00----------------------------------------------------------1.00----------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCTTG...................................................201.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................TCTTTGTTTTTAATTCACAGA.................................................2111.001.00-----------------------------------------------------------------------------------------------1.00---------------------------------------------------------
..........................................................................CAGAACTTAAGAATTCTG................................................................................................181.000.00-------------------------------------------------1.00-------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCATTCAGA..............................................................................................................2811.001.00----1.00----------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCA....................................................................................................................2211.001.00-------------------------1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGGG...............2111.001.00-----------------------------------------------------------------------------1.00---------------------------------------------------------------------------
......................................................................................ATTTTGTAGAAATCAAGCT...................................................................................1911.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TAATGAAAAGAAATAGAGATCGG........................2311.001.00------------------------------------------------------------------------------------------------------------------------1.00--------------------------------
...........................................................................AGAACTTAAGAATTTTGTAGAAATCAAGC....................................................................................2911.001.00-----------------1.00---------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGG................2011.001.00-----------------------------------------1.00---------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCATT..................................................................................................................2411.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................TTTTGTAGAAATCAAGCTATTTGCTAAAAG.......................................................................3011.001.00-----------------1.00---------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACCG..................................................221.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................TAAGAATTTTGTAGAAATCAAGCT...................................................................................2411.001.00---------------------------------------------------------------------------------------------------------------------------------------------1.00-----------
..............................CTCACATGCTGAATTTTTGT..........................................................................................................................................201.000.00-------------------------------------------------------------------------------------------------------1.00-------------------------------------------------
.........................................................................................................................................................ATAGAGATCGGTGTGTAGG................1911.001.00------------------------------------1.00--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCTCAG..................................................211.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................CTTTGTTTTTAATTCACAG..................................................1911.001.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................AAGAATTTTGTAGAAATCAAGCT...................................................................................2311.001.00------------------------------------1.00--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAAT.................................................2211.0094.00----------------------------------------1.00----------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCTCA...................................................201.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................CGGTGTGTAGGGGGAGTGGTGCA....2311.002.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................AATGAAAAGAAATAGACGT...........................191.000.00-------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGAGATCGGTGTGTAGGGGGAGTGGCG......2711.002.00-----------------------------------------------1.00---------------------------------------------------------------------------------------------------------
........................................................................TTCAGAACTTAAGAATTTTGTA..............................................................................................2211.001.00---------------------------------------------------------------------------------------------------------------------------------1.00-----------------------
...................................................................................AGAATTTTGTAGAAATCAAG.....................................................................................2011.001.00-----------1.00---------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................ATTTTGTAGAAATCAAGCTATTTGCTAAA.........................................................................2911.001.00-------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................AAATAGAGATCGGTGTGTAGGGGGAGTGGTGCAT...341.000.00-------------------------------------------------------1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGGGGGAGTGGCAAG....3211.001.00-----------------------------------------------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGATC...............................................2411.00755.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................CTTTGTTTTTAATTCACAGA.................................................2011.001.00----------------------------------1.00----------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGGGGGAGTGGTGCA....321.000.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------------
...........................................TTTTTGGGTGAGTTAAAAAA.............................................................................................................................201.000.00------------------------------------------------------1.00--------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCGTA...................................................201.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGAGATCGGTGTGTAGGGGG.............2011.001.00-----------------------------------------1.00---------------------------------------------------------------------------------------------------------------
............................................................................................................................................................GAGATCGGTGTGTAGGGGGAGTGGTGC.....271.000.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------------
.........................CGAAACTCACATGCTGAA.................................................................................................................................................1820.500.50-------------------------------------------------------------------------------------------------------------------------------------------------------0.50-
.......................GTCGAAACTCACATGCTGAA.................................................................................................................................................2020.500.50----------------------------------------------------------0.50----------------------------------------------------------------------------------------------
..................................................................................................................................................AAAAGAAATAGAGATCGGTG......................2020.500.50-----------------------------------------------------------------------------------------------------------------------------------------------------0.50---
.....................................................................................................................TTCTTTGTTTTTAATTCACGTT.................................................2220.503.000.50--------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACTGG.................................................2220.503.000.50--------------------------------------------------------------------------------------------------------------------------------------------------------
..........................GAAACTCACATGCTGAATTTTTGG..........................................................................................................................................2420.500.50------------------------------------------------------------------------0.50--------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACCGA.................................................2220.503.00----------------------------------------------------------------------------------------------------------------------------------------------------0.50----
.................................................................................................................................................................CGGTGTGTAGGGGGA............1520.500.50-----------------0.50---------------------------------------------------------------------------------------------------------------------------------------
..............TTCTTCATTGTCGAAACTCACATGCTGA..................................................................................................................................................2820.500.50----------------------------------------------0.50----------------------------------------------------------------------------------------------------------
...........TGTTTCTTCATTGTCGAAACTC...........................................................................................................................................................2220.500.50---------------------------------------------------------------------------------------------------------------------------------------------------0.50-----
.....................................................................................................................TTCTTTGTTTTTAATTCACTGA.................................................2220.503.000.50--------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACGGA.................................................2220.503.000.50--------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................ATAGAGATCGGTGTGTAG.................1820.500.50--------------0.50------------------------------------------------------------------------------------------------------------------------------------------
..............TTCTTCATTGTCGAAACTCACATG......................................................................................................................................................2420.500.50--------------------------------------------------------------------------------------------------------------------------------------------------0.50------
.....................................................................................................................................................AGAAATAGAGATCGGTGTG....................1920.500.50-------------------------------------------------------------------------------------------------------------------------------------------------0.50-------
.......................GTCGAAACTCACATGCTGAATTTTTG...........................................................................................................................................2620.500.50--------0.50------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTA..................1820.500.50----------------------------------------------------------0.50----------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACCG..................................................2120.503.000.50--------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CTTAAGAATTTTGTAGAAA..........................................................................................1920.500.50-----------------------------------------------------------------------0.50---------------------------------------------------------------------------------
......................................................................................................................................................GAAATAGAGATCGGTGTGTAG.................2120.500.50--------------0.50------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACCGC.................................................2220.503.000.50--------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................TTTGTTTTTAATTCACAGA.................................................1920.500.50---------------------------0.50-----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCA.....................................................1850.400.400.20------------------------0.20-------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCAAAG..................................................2150.400.400.200.20-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCAAAGA.................................................2250.400.400.40--------------------------------------------------------------------------------------------------------------------------------------------------------
.................................ACATGCTGAATTTTTGG..........................................................................................................................................1730.330.33-------------------------------------------------------------------------0.33-------------------------------------------------------------------------------
.........................................................................................................................TTGTTTTTAATTCACAGA.................................................1830.330.33-------------------------------------0.33-------------------------------------------------------------------------------------------------------------------
...............................................................................CTTAAGAATTTTGTAGAA...........................................................................................1830.330.33------------------------------------------------------------------------------------------------------------------------------------------------0.33--------
..................................CATGCTGAATTTTTGG..........................................................................................................................................1640.250.25-----------------0.25---------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCAAAT..................................................2150.200.400.20--------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCATTG..................................................2150.200.400.20--------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCATAGT.................................................2250.200.400.20--------------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................TGTTTTTAATTCACAGA.................................................1790.110.110.11--------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................CATTCAGAACTTAAG.......................................................................................................15100.100.10--------------------------------------------------------------------------------------------------------------------------------------------------------0.10
.......................................................................................TTTTGTAGAAATCAAG.....................................................................................16100.100.10-----------------------------------------------0.10---------------------------------------------------------------------------------------------------------

Antisense strand
AAAATTACCAATGTTTCTTCATTGTCGAAACTCACATGCTGAATTTTTGGGTGAGTTAAAACCAAAGTCTCATTCAGAACTTAAGAATTTTGTAGAAATCAAGCTATTTGCTAAAAGTTCTTTGTTTTTAATTCACAGACATAATGAAAAGAAATAGAGATCGGTGTGTAGGGGGAGTGGTAAGTATA
............................................................................(((.((((((((.....((((....(((.....))).....))))..)))))))))))......................................................
............................................................................77...........................................................138................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189785SRR037943(GSM510481)
293DcrTN. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR314796(SRX084354)
Total RNA, fractionated (15-30nt). (cell line)
DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189786SRR343335SRR037936(GSM510474)
293cand1. (cell line)
SRR343334SRR029131(GSM416760)
MCF7. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR189787SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
SRR343332(GSM796035)
KSHV (HHV8), EBV (HHV-4). (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029129(GSM416758)
SW480. (cell line)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
DRR001487(DRX001041)
Hela long nuclear cell fraction, LNA(+). (hela)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)
GSM956925PAZD5SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM532886(GSM532886)
G850T. (cervix)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577745(Rovira)
total RNA. (breast)
SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR029124(GSM416753)
HeLa. (hela)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................TTAAGAATTTTGTAGCG........................................................................................... 173.000.00---------------------------2.00-1.00---------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................TGAAAAGAAATAGAGATAAC........................ 201.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................GGGAGTGGTAAGTATAT 171.000.00-----------------------------------------------------------------------------------------------------------------------------1.00---------------------------