ID: hsa-mir-6830
GENE: P4HA2(12)
chr5:131553492-131553741-


(1)
AGO1.ip
(3)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(11)
BRAIN
(5)
BREAST
(13)
CELL-LINE
(3)
CERVIX
(9)
HEART
(4)
HELA
(1)
KIDNEY
(2)
LIVER
(3)
OTHER
(1)
OTHER.ip
(16)
SKIN
(1)
XRN.ip

Sense strand
CCTCTTTCTTCCTGAAGTTGCGAGATAGAGCCCCATGAGTGCCTAGGCCCCCTTTAACTCCAAGTCCCCATAATCCTCAGAGAGCTGACATGTTCTTATCCCAGGGGACTTGCTTCTGTGCTGGTATTCTGTGCCCCAAGGAAGGAGGCTGGACATCCCTCATCTGTTTCTCACTGGTGTCTTTCTTCTCTCCCTTGCAGGGCACATGACTGACCTGATTTATGCAGAGAAAGAGCTGGTGCAGTCTCTG
........................................................................................................................................(((((.((((((..(((((((..................)))))))..)))).)).))))).....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR029125(GSM416754)
U2OS. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577741(Rovira)
total RNA. (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR189786SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040017(GSM532902)
G645T. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATC.............................................................................................22123.0023.003.003.00-2.00---1.002.00---1.002.002.002.001.00---------1.00-----1.00----1.00------------------1.00-------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCAG..................................................23119.0019.00-1.002.00--2.001.00-1.00--1.00---------1.002.00------------1.00-----1.001.00-1.00-1.00-------1.00-----1.00-----1.00---
.......................................................................................................................................CCAAGGAAGGAGGCTGGACAT..............................................................................................21118.0018.002.00--3.003.00-1.00---2.00--1.00----------1.00------1.00-------1.00-----1.00-1.00---------------1.00------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACAT..............................................................................................2218.008.00--1.00---1.00-----1.00-1.001.001.00-1.00------1.00--------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACATC.............................................................................................2317.007.00-1.00---1.001.00------------2.00----1.00-1.00-------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACA...............................................................................................2114.004.00---------1.001.00------------1.00-1.00--------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGC....................................................2114.004.00--------1.00----------------------------------------------1.00-----1.001.00-------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCA...................................................2214.004.00-------2.00---------1.00----------------------------------------1.00-----------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAGT.................................................2213.001.00-1.00---1.00----------------------------1.00-----------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATCA............................................................................................2313.0023.001.00-------------------1.001.00------------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACATCA............................................................................................2412.007.001.00----------------------1.00----------------------------------------------
.....................................................................................................................................CCCCAAGGAAGGAGGCTGGACATC.............................................................................................2412.002.00---------------------------------------------------1.00-----1.00------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACA...............................................................................................2012.002.00---------1.00------1.00-----------------------------------------------------
..................................................................................................................................................................................................................TGACCTGATTTATGCAGACAA...................212.000.00---------------------------2.00------------------------------------------
.....................................................................................................................................CCCCAAGGAAGGAGGCTGGACA...............................................................................................2212.002.00-----------------1.00-------------------------1.00--------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATCT............................................................................................2312.0023.00------------1.00---------------------------------------------------1.00-----
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATT.............................................................................................2212.0018.00---------1.00-1.00----------------------------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACAA..............................................................................................2111.002.001.00---------------------------------------------------------------------
...........................................................................................................................................................................................................ACATGACTGACCTGATTTATGCAGAGAAAG.................3011.001.00--------------------1.00-------------------------------------------------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAG..................................................2111.001.00--1.00-------------------------------------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACACA.............................................................................................2211.002.00------------------1.00---------------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGTCAT..............................................................................................221.000.00-----------1.00----------------------------------------------------------
..........................................................................................................................................................................................................CACATGACTGACCTGATTTATGCAGA......................2611.001.00----1.00-----------------------------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCAGT.................................................2411.0019.00--1.00-------------------------------------------------------------------
..................................................................................................................................................GGCTGGACATCCCTCATCTGT...................................................................................2111.001.00---------------------------------1.00------------------------------------
..............................................................................................................................................................................................................TGACTGACCTGATTTATGCAGAGAAAGAGCTGGT..........3411.001.00------------------------------------1.00---------------------------------
................................................................................................................................................................................................................ACTGACCTGATTTATGC.........................1711.001.00----------------------------------------1.00-----------------------------
.........................................................................................................................................AAGGAAGGAGGCTGGACTTAC............................................................................................211.000.00----------------------------1.00-----------------------------------------
..........CCTGAAGTTGCGAGATAGAGC...........................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------1.00----
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCGCAG....................................................211.000.00-----------------------------------------------------1.00----------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATA.............................................................................................2211.0018.00------------------------------------------------1.00---------------------
........................................................................................................................................CAAGGAAGGAGGCTGGACATA.............................................................................................211.000.00------------------------------1.00---------------------------------------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAGTAG...............................................2411.001.00-----------------------------1.00----------------------------------------
.......................................................................................................................................................................................................GGGCACATGACTGACCTGATTTATGCAGAGAA...................3211.001.00-----------------------------------------------------------1.00----------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATAGA...........................................................................................2411.0018.00-------1.00--------------------------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTACA...................................................221.000.00--------------------------------------1.00-------------------------------
........................................................................................................................................CAAGGAAGGAGGCTGGACA...............................................................................................1920.500.50----------------------------0.50-----------------------------------------
.........................................................................................................................................AAGGAAGGAGGCTGGACAT..............................................................................................1930.330.33-------------------------------------------------------------------0.33--
...................................................................................................................CTGTGCTGGTATTCT........................................................................................................................1560.170.17--------------------------------------------------------------------0.17-
.................................CATGAGTGCCTAGG...........................................................................................................................................................................................................1490.110.11---------------------------------------------------------------------0.11

Antisense strand
CCTCTTTCTTCCTGAAGTTGCGAGATAGAGCCCCATGAGTGCCTAGGCCCCCTTTAACTCCAAGTCCCCATAATCCTCAGAGAGCTGACATGTTCTTATCCCAGGGGACTTGCTTCTGTGCTGGTATTCTGTGCCCCAAGGAAGGAGGCTGGACATCCCTCATCTGTTTCTCACTGGTGTCTTTCTTCTCTCCCTTGCAGGGCACATGACTGACCTGATTTATGCAGAGAAAGAGCTGGTGCAGTCTCTG
........................................................................................................................................(((((.((((((..(((((((..................)))))))..)))).)).))))).....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR029125(GSM416754)
U2OS. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577741(Rovira)
total RNA. (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR189786SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040017(GSM532902)
G645T. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................................GACCTGATTTATGCATACA.................... 191.000.00--------------------------------------------------1.00-------------------
.................................................................CCCCATAATCCTCAGATAGG..................................................................................................................................................................... 201.000.00----------------------------------------------------1.00-----------------
.............................................................................................................................................................................CTGGTGTCTTTCTTCAGCA.......................................................... 191.000.00-------------------------------------------------1.00--------------------