ID: hsa-mir-6828
GENE: CLDN11
chr3:170140751-170141000+


(1)
AGO2.ip 		(9)
BRAIN 		(8)
BREAST 		(7)
CELL-LINE 		(2)
HEART 		(2)
LIVER 		(3)
OTHER 		(17)
SKIN

Sense strand
TCTCCAGCCCCCTTTTTTCTTGCTGAGTTGTTTTAAAAGTTAAAAAGTGCTTAGTGACCTTGGACAACATTAGCACCTTCTAAGTCCTGGAATCCACCAAGAAGGAGGAAGGGAGATGGTGCTGAATTCCCCTAAGGCAGGGCTCAGGAAGCAAGAGAACCCTGTGGTCTAACCTTTCCCATCTGCTCTCTTGTTCCCAGGCTACGTGCAGGCCTGCCGCGCCCTGATGATTGCTGCCTCGGTCCTGGGT
..................................................................................................................................................((.(((((((((.....((((...........))))....))))))))).))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR029129(GSM416758)
SW480. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577745(Rovira)
total RNA. (breast)		SRR189785GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR343334SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343335SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGG...................................................................................22130.0030.006.002.003.001.00-1.001.00---2.00----2.001.001.00--1.00-1.00---1.00-------1.001.00----------1.001.00-1.00-1.001.00
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGT.....................................................................................22110.0010.002.003.002.001.00--1.00-----------------------------------------1.00----
.................................................................................................................................................AGGAAGCAAGAGAACCCTGT.....................................................................................2017.007.002.002.001.00-1.00---------------------------------------1.00--------
....................................................................................................................................................................................ATCTGCTCTCTTGTTCCCAGT.................................................215.000.00--2.00-------------1.00-1.00----------------------1.00-----------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGA..................................................................................2314.0030.00-1.00------------1.00------1.00-----------1.00-------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGTGG...................................................................................2414.004.001.001.00-1.00----------------------------------------------1.00--
...............................................................................................................................................TCAGGAAGCAAGAGAACCCT.......................................................................................2014.004.00-2.00--1.00----1.00-------------------------------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGTG....................................................................................2313.003.00----1.001.00------------------1.00----------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGA...................................................................................2212.002.00-----1.00--------1.00--------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTG....................................................................................2112.002.00---------1.00-------------1.00-----------------------------
...................................................................................................................................................................................CATCTGCTCTCTTGTTCCCAGT.................................................222.000.00----------------------------------------1.00----1.00-------
....................................................................................................................................................................................ATCTGCTCTCTTGTTCCCAGTA................................................222.000.00-----------------1.00------------------------1.00----------
........................................................................................................................................................................CTAACCTTTCCCATCACAG...............................................................191.000.00-------------1.00---------------------------------------
.......................................................................................................................................................................................................................GCCGCGCCCTGATGATTGCTGCCTCGGTCCT....3111.001.00-----------1.00-----------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGTTTA...............................................................................261.000.00------------------------------------1.00----------------
.............................................................................................................AGGGAGATGGTGCTGAC............................................................................................................................171.000.00-------------------------------------1.00---------------
...................TTGCTGAGTTGTTTTAACAA...................................................................................................................................................................................................................201.000.00-----------------------------1.00-----------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGTGA...................................................................................2411.003.00------1.00----------------------------------------------
....................................................................................................................................................................................ATCTGCTCTCTTGTTCCCAGTAT...............................................231.000.00------------1.00----------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCG........................................................................................171.000.00--------1.00--------------------------------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTGA.....................................................................................221.000.00----------------------------1.00------------------------
.....................................................................................................................................................................................................................................ATTGCTGCCTCGGTCTGA...181.000.00---------------------------------------1.00-------------
...........................................................................................................................................GGGCTCAGGAAGCAATAG.............................................................................................181.000.00-----------1.00-----------------------------------------
................................................................................................................................................CAGGAAGCAAGAGAACCCTGTGG...................................................................................2311.001.001.00----------------------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGTCT................................................................................2511.001.00---1.00-------------------------------------------------
...................................................................................................AGAAGGAGGAAGGGAGGCG....................................................................................................................................191.000.00------------------------------1.00----------------------
..........................................AAAAGTGCTTAGTGACCTTG............................................................................................................................................................................................2011.001.00---1.00-------------------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGAA..................................................................................2311.002.001.00----------------------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGAA.................................................................................2411.0030.00---1.00-------------------------------------------------
..............................................................................................................................................CTCAGGAAGCAAGAGAACCCTG......................................................................................2211.001.001.00----------------------------------------------------
................................................................................................................................................CAGGAAGCAAGAGAACCCTGTG....................................................................................2211.001.00--1.00--------------------------------------------------
....................................................................................................................................................................................ATCTGCTCTCTTGTTCCCAGTT................................................221.000.00----1.00------------------------------------------------
................................................................................................................................................CAGGAAGCAAGAGAACCC........................................................................................1811.001.00--1.00--------------------------------------------------
.................................................................................................................................................AGGAAGCAAGAGAACCCTGTGGTGT................................................................................251.000.00---------------------------1.00-------------------------
...............................................................................................................................................TCAGGAAGCAAGAGAACCCTAA.....................................................................................2211.004.00-1.00---------------------------------------------------

Antisense strand
TCTCCAGCCCCCTTTTTTCTTGCTGAGTTGTTTTAAAAGTTAAAAAGTGCTTAGTGACCTTGGACAACATTAGCACCTTCTAAGTCCTGGAATCCACCAAGAAGGAGGAAGGGAGATGGTGCTGAATTCCCCTAAGGCAGGGCTCAGGAAGCAAGAGAACCCTGTGGTCTAACCTTTCCCATCTGCTCTCTTGTTCCCAGGCTACGTGCAGGCCTGCCGCGCCCTGATGATTGCTGCCTCGGTCCTGGGT
..................................................................................................................................................((.(((((((((.....((((...........))))....))))))))).))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR029129(GSM416758)
SW480. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577745(Rovira)
total RNA. (breast)		SRR189785GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR343334SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343335SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
............................................................................CTTCTAAGTCCTGGAATCTG.......................................................................................................................................................... 201.000.00--------------------------------1.00--------------------
...........................................................................................................GAAGGGAGATGGTGCTCT............................................................................................................................. 181.000.00-------------------------1.00---------------------------
...................................................................................GTCCTGGAATCCACCAACATG.................................................................................................................................................. 211.000.00--------1.00--------------------------------------------
.............................................................................................................................................................................CTTTCCCATCTGCTCTTTG.......................................................... 191.000.00-------1.00---------------------------------------------
....................................................................................................................................................AAGCAAGAGAACCCTGTAT................................................................................... 191.000.00-------------------1.00---------------------------------
.................................................................................AAGTCCTGGAATCCACCAATTT................................................................................................................................................... 221.000.00-------------------------------------------1.00---------
...........................................................................................................GAAGGGAGATGGTGCTCTT............................................................................................................................ 191.000.00-------------------------------1.00---------------------
...................................................................................................................................................................................CATCTGCTCTCTTGTCTGG.................................................... 191.000.00-------1.00---------------------------------------------
....................................................................................................................................................................................................CCAGGCTACGTGCAGAGGT................................... 191.000.00--------------------------------------1.00--------------
..........................................AAAAGTGCTTAGTGAACG.............................................................................................................................................................................................. 181.000.00-------------1.00---------------------------------------
.......................................................................................................................................................................................................................................TGCTGCCTCGGTCCTGTT. 181.000.00------------1.00----------------------------------------
........................................................................................................................................................................................................................................GCTGCCTCGGTCCTGGG. 1730.330.33------------------0.33----------------------------------
.....................................................................................................AAGGAGGAAGGGAGATG.................................................................................................................................... 1770.140.14-------------------0.14---------------------------------