ID: hsa-mir-6775
GENE: SLC7A5(1)
chr16:87868148-87868397-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(7)
BRAIN 		(12)
BREAST 		(40)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(7)
HELA 		(8)
LIVER 		(3)
OTHER 		(2)
RRP40.ip 		(23)
SKIN 		(1)
XRN.ip

Sense strand
GCAACATGCCCAGCACTGTATGCAGAGTCGAGGGCGGGACAGCCCGGTGTGTGAGGCAGATGGAGTGCAGATCGCATCTTGGTGACCTGGAAGTCAGCAGCCGTGGGTGTGGAGGGCCCAGGAGGGCTGAGGAACCTCGGGGCATGGGGGAGGGAGGCTGGACAGGAGAGGGCTCACCCAGGCCCTGTCCTCTGCCCCAGGTGAACCTGGCCCTGCCTGTGTTCTTCATCCTGGCCTGCCTCTTCCTGAT
..........................................................................................................................................((((((.((((.((((...((((....(((....)))..)))).)))).)))).))))))....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029131(GSM416760)
MCF7. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037935(GSM510473)
293cand3. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR038853(GSM458536)
MELB. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189787SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR189782SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGA.................................................22193.0024.004.0016.001.0015.001.0015.002.002.00-2.00-3.00-1.003.001.00----2.001.001.002.00-2.00-1.00-1.00---1.00--2.00---1.00---2.00---------1.00-1.00--1.00------1.00-1.00------1.00---------1.00---1.00----1.00---1.00-------------1.00----
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGT.................................................22175.0024.00-23.00--7.00-2.00--1.00-1.00--1.001.00-1.004.003.00--2.00-3.001.00-1.002.001.003.00----1.00-------------1.00-1.00-1.001.00------1.00-1.00-1.00-1.00-----------1.00-1.00-1.00----1.00---1.001.00--1.00--1.00----------1.00------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCC....................................................19174.0074.0031.001.0033.00---1.00--1.00---4.00--3.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................ACAGGAGAGGGCTCACCC.......................................................................18133.0033.00----------10.00-8.00--------2.00----3.00-----1.00-------------2.00------1.00----------1.00-----1.00-1.00-------1.00---------------------1.00---1.00----------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCA...................................................20130.0030.0011.00-9.00-2.00----1.00---1.00--1.00------------------1.00---------------1.00-----1.00--------------------------------1.00-----------------1.00--------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAG..................................................21124.0024.0010.002.002.00---1.00-------2.00-------------------2.00------------1.00--1.00--------------------------1.00----1.00------------1.00---------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAA................................................23117.0024.00----5.00--1.00------1.00------------------------1.00-2.00-2.00--------2.00------------------1.00----1.00---------------------------1.00------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCC.....................................................18114.0014.009.00-5.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GGCCCTGTCCTCTGCCCCAGT.................................................21113.001.00--------13.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCATT.................................................2218.0030.00-3.00--2.00---------1.00---------------------------1.00------------------------------------------------------1.00-------------------
........................................................................................................................................TCGGGGCATGGGGGAGGGAGGCTGG.........................................................................................2518.008.00-------1.00-1.00-1.00-1.00-2.001.00---------------------------------------------1.00------------------------------------------------------
........................................................................................................................................TCGGGGCATGGGGGAGGGAGGCTGGT........................................................................................2616.008.00---1.00---4.00-------1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGTA................................................2316.0024.00----3.00----------------------------1.00--------1.00-------------------------------------------1.00------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAAGT..............................................2515.0024.00---2.00--2.00--------------------------------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGTAT...............................................2415.0024.00-----4.00------------------------------------------------------------------------------------------------------------1.00--
....................................................................................ACCTGGAAGTCAGCAGCCGTGGGTGTGGAGGGCCCAGGAGGGCTGAGGAACCTCGGGGC...........................................................................................................5914.004.00-----------------4.00---------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAT................................................2314.0024.001.003.00-------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CTCGGGGCATGGGGGAGGGAGGCTGGT........................................................................................2714.001.00-------4.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAGA...............................................2414.0024.00---1.001.00------1.00-------------------------------------1.00-------------------------------------------------------------------
........................................................................................................................................TCGGGGCATGGGGGAGGGAGGCTAT.........................................................................................253.000.00----3.00----------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................CAGGCCCTGTCCTCTGCCCC....................................................2013.003.002.00-1.00------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAAT.................................................2213.0030.00----1.00----1.00-------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAA..................................................2113.0030.00------------------------------------------------------------1.00-------------1.00----------------------------------1.00-------
............................................................................................................................................................GCTGGACAGGAGAGGGCTCACCCAGGC...................................................................2713.003.00-3.00-------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CCAGGCCCTGTCCTCTGCCCCAG..................................................2313.003.00---------3.00-----------------------------------------------------------------------------------------------------------
......................................................................................................GTGGGTGTGGAGGGCGGAG.................................................................................................................................192.000.00------------------------------------------------2.00--------------------------------------------------------------------
..........................................................................................................................................GGGGCATGGGGGAGGGAGGCTGG.........................................................................................2312.002.00-------2.00-------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCGGGGCATGGGGGAGGGAGT.............................................................................................212.000.00---2.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGC.................................................2212.0024.00-2.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................AGGCTGGACAGGAGAGGG..............................................................................1812.002.00-2.00-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................CTGGACAGGAGAGGGCTCACCCAGG....................................................................2512.002.00-2.00-------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTGAACCTGGCCCTGCCTGTG.............................2212.002.00-2.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................GCCGTGGGTGTGGAGGGCCCAGGAGG.............................................................................................................................2612.002.00---2.00-----------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................CAGGCCCTGTCCTCTGCCCCAA..................................................222.000.00------2.00--------------------------------------------------------------------------------------------------------------
........CCCAGCACTGTATGCAGAGTCGAGGGC.......................................................................................................................................................................................................................2712.002.00------2.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAAG...............................................2412.0024.00-----------1.00---------1.00-----------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCTTTT.................................................2212.0014.00----2.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGATT...............................................2412.0024.00---1.00------------------------------------------------------1.00----------------------------------------------------------
..................................................................................................................................................................................CAGGCCCTGTCCTCTGCCCCAG..................................................2212.002.00------1.00--------------------------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAC................................................2312.0024.00-----------2.00---------------------------------------------------------------------------------------------------------
....................................................................................ACCTGGAAGTCAGCAGCCGTGGGTGTGGAGGGCCCAGGAGGGCTGAGGAACCTCGCGGC...........................................................................................................591.000.00-----------------1.00---------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGGTGAACCTGGCCCTGC..................................1811.001.00-------------------1.00-------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................TTCATCCTGGCCTGCCTCTTCC....2211.001.00--------------------------------------1.00------------------------------------------------------------------------------
.....ATGCCCAGCACTGTATGCAGAG...............................................................................................................................................................................................................................2211.001.00---1.00-----------------------------------------------------------------------------------------------------------------
............................................................................................................................................................GCTGGACAGGAGAGGGCTCACCCAGG....................................................................2611.001.00-1.00-------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CTCGGGGCATGGGGGAGGGAGGCTGG.........................................................................................2611.001.00---1.00-----------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................TGGACAGGAGAGGGCTCACC........................................................................2011.001.001.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCT...................................................2011.0074.001.00--------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................CGGGGCATGGGGGAGGGAGGCTGG.........................................................................................2411.001.00---------------1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAAGA..............................................2511.0024.00-1.00-------------------------------------------------------------------------------------------------------------------
................TGTATGCAGAGTCGAGGGC.......................................................................................................................................................................................................................1911.001.00--------------------------------------------------1.00------------------------------------------------------------------
..........CAGCACTGTATGCAGAGTCGAGGGCGGG....................................................................................................................................................................................................................2811.001.00------1.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................TGGGTGTGGAGGGCCCAGG................................................................................................................................1921.001.00--1.00------------------------------------------------------------------------------------------------------------------
......................................................................................................GTGGGTGTGGAGGGCGG...................................................................................................................................171.000.00---1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................GTGGGTGTGGAGGGCCCAGGAGGGCTGA........................................................................................................................2811.001.00-----------------------------------------------------------------------------------------------------------------1.00---
...............................................................................................................................................................................................................................CTTCATCCTGGCCTGCCTCTTCCTG..2511.001.00-------------------------------1.00-------------------------------------------------------------------------------------
..........................................................................................................................................GGGGCATGGGGGAGGGAGGCTGGT........................................................................................2411.002.00---------------1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCCG..................................................2111.0074.001.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCCGA.................................................2211.0074.00---1.00-----------------------------------------------------------------------------------------------------------------
..............................................................................................................GGAGGGCCCAGGAGGGCTGA........................................................................................................................2011.001.00-------------------------------------1.00-------------------------------------------------------------------------------
.....................................................................................................................CCAGGAGGGCTGAGGAACCTG................................................................................................................211.000.00-----------------------------1.00---------------------------------------------------------------------------------------
..........CAGCACTGTATGCAGAGTCGAGGGCGGGA...................................................................................................................................................................................................................2911.001.00---------1.00-----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTGAACCTGGCCCTGCCTGT..............................2111.001.00---------------------------1.00-----------------------------------------------------------------------------------------
......................................................................................................................................CCTCGGGGCATGGGGGAGGGAGGCTGGT........................................................................................281.000.00---1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAAA...............................................2411.0024.00-------------------------------------1.00-------------------------------------------------------------------------------
......................................................................................................................CAGGAGGGCTGAGGAACCTG................................................................................................................201.000.00-----------------------------------------------1.00---------------------------------------------------------------------
..................................................................................................................................................................................CAGGCCCTGTCCTCTGCCCCAGT.................................................2311.002.00-------------------------------------------------------1.00-------------------------------------------------------------
................................................................................................................................................................GACAGGAGAGGGCTCACCCA......................................................................2011.001.00--------------------------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................GGCCCTGTCCTCTGCCCCAGA.................................................2111.001.00----------------1.00----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAAGT................................................2311.0030.00--1.00------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCGGGGCATGGGGGAGGGAGGCTGT.........................................................................................251.000.00--------------------1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCATA.................................................2211.0030.00------------------------------------------------------------------------------------1.00--------------------------------
.......................................CAGCCCGGTGTGTGAGGC.................................................................................................................................................................................................1811.001.00------1.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAAC...............................................2411.0024.00---1.00-----------------------------------------------------------------------------------------------------------------
..........................................CCCGGTGTGTGAGGCAGATGGAGTGC......................................................................................................................................................................................2611.001.00------1.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................TGGACAGGAGAGGGCTCACCCAGG....................................................................2411.001.001.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGGTGAACCTGGCCCTGCCTGTTC............................241.000.00--------------------------------------1.00------------------------------------------------------------------------------
..........................................................................................................................................................................................................................GTGTTCTTCATCCTGGCCTGCCTCTTC.....2711.001.00-------------------------------1.00-------------------------------------------------------------------------------------
........................................................................................................................................TCGGGGCATGGGGGAGGGAGGCTGGCG.......................................................................................2711.008.001.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAAAA................................................2311.0030.00----------------------------1.00----------------------------------------------------------------------------------------
...................................................................................................................GCCCAGGAGGGCTGAGGA.....................................................................................................................1811.001.00-------------1.00-------------------------------------------------------------------------------------------------------
........................................................................................................................................TCGGGGCATGGGGGAGGGAAA.............................................................................................2121.000.50---1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGTACA..............................................2511.0024.00-1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCGGT.................................................2211.0074.00-1.00-------------------------------------------------------------------------------------------------------------------
...........................................CCGGTGTGTGAGGCAGATGGA..........................................................................................................................................................................................2111.001.001.00--------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CTCGGGGCATGGGGGAGGGAGGCTGT.........................................................................................261.000.00---1.00-----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GGCCCTGTCCTCTGCCCCAG..................................................2011.001.00----------------------------------------1.00----------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCAA...................................................2011.0014.00----1.00----------------------------------------------------------------------------------------------------------------
........................................................................................................................................................GGAGGCTGGACAGGACC.................................................................................171.000.00---------------------------------------------1.00-----------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAGAGT...............................................2411.0024.00--------------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................GCTGGACAGGAGAGGGCTCACCCAGGCCCTG...............................................................3111.001.00-1.00-------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................ACAGGAGAGGGCTCATGTA......................................................................191.000.00---------------------------------------------1.00-----------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCCCAATAA...............................................2411.0030.00------1.00--------------------------------------------------------------------------------------------------------------
.......................AGAGTCGAGGGCGGGAGAAG...............................................................................................................................................................................................................201.000.00-----------------------------------------------------------------------------------------------------------1.00---------
................................................................................................................................................................................................................................TTCATCCTGGCCTGCCTCTTCCT...2311.001.00-------------------------------------------------------------------------1.00-------------------------------------------
..................................................................................................................................................................................CAGGCCCTGTCCTCTGCCCCTAT.................................................2311.003.00----1.00----------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCGGGGCATGGGGGAGG.................................................................................................1731.001.000.33--0.33-------0.33---------------------------------------------------------------------------------------------------------
..................................................................................................AGCCGTGGGTGTGGAGGGCC....................................................................................................................................2011.001.00----------------------------------------------------------------------------------------------------1.00----------------
........................................................................................................................................TCGGGGCATGGGGGAG..................................................................................................1630.670.67-----------0.33----------0.33----------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCC......................................................1720.500.50-------------------------------------------------------------------------------------------------------------------0.50-
...................................................................................................................................................................................AGGCCCTGTCCTCTGCCATA...................................................2020.500.50------0.50--------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCGGGGCATGGGGGAGGGA...............................................................................................1920.500.50--0.50------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CATCCTGGCCTGCCTCT.......1730.330.33-------------------------------0.33-------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGCTCC....................................................1940.250.25--0.25------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGCCCTGTCCTCTGC.......................................................1640.250.25---------0.25-----------------------------------------------------------------------------------------------------------
.........................................................................................................GGTGTGGAGGGCCCAGGA...............................................................................................................................1840.250.25--------------------------------------------------------------------------------------------------------------------0.25
......................................................................................CTGGAAGTCAGCAGCC....................................................................................................................................................1660.170.17-------------------------------------------------------0.17-------------------------------------------------------------

Antisense strand
GCAACATGCCCAGCACTGTATGCAGAGTCGAGGGCGGGACAGCCCGGTGTGTGAGGCAGATGGAGTGCAGATCGCATCTTGGTGACCTGGAAGTCAGCAGCCGTGGGTGTGGAGGGCCCAGGAGGGCTGAGGAACCTCGGGGCATGGGGGAGGGAGGCTGGACAGGAGAGGGCTCACCCAGGCCCTGTCCTCTGCCCCAGGTGAACCTGGCCCTGCCTGTGTTCTTCATCCTGGCCTGCCTCTTCCTGAT
..........................................................................................................................................((((((.((((.((((...((((....(((....)))..)))).)))).)))).))))))....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029131(GSM416760)
MCF7. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037935(GSM510473)
293cand3. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR038853(GSM458536)
MELB. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189787SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR189782SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
..........................................................................................................................................................AGGCTGGACAGGAGATCG.............................................................................. 181.000.00---------------------------------------------------------------------------------------------------------------1.00-----
..................................................................................................................................................................................CAGGCCCTGTCCTCTGCTGGT................................................... 211.000.00---------------------------------------------------------------------1.00-----------------------------------------------
...................................GGGACAGCCCGGTGTGTAG.................................................................................................................................................................................................... 191.000.00------------------------------------------------------------------------------1.00--------------------------------------
..........................................................................................................................................................AGGCTGGACAGGAGAGTCG............................................................................. 191.000.00-----------------------------------------------------------------------------------------------------1.00---------------
.................................................................................................................................................................................................................GCCCTGCCTGTGTTCTTTT...................... 191.000.00---------------------------------------------------------------------------------------------------------1.00-----------
...............................................................................................................................................................................ACCCAGGCCCTGTCCTAG......................................................... 181.000.00-------------------------------------------------------------------------------------------------------1.00-------------
..........................................................................................................................................................AGGCTGGACAGGAGAGTCGC............................................................................ 201.000.00-------------------------------------------------------------------------------------------1.00-------------------------
.......................................................................................................................................................................................................................CCTGTGTTCTTCATCCTGGC............... 2011.001.00---1.00-----------------------------------------------------------------------------------------------------------------