ID: hsa-mir-6745
GENE: PACSIN3(4)
chr11:47201088-47201337-


(2)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(6)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(18)
CELL-LINE 		(1)
CERVIX 		(5)
HEART 		(3)
HELA 		(11)
LIVER 		(3)
OTHER 		(5)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
ACTCTTTTATATGCTGTGCCTGATGTCACCTCCCTTGTTAGGCTGCTGGGGTCCTTGAGGGCAGGAGCTGGGTCTTGGGACTGATTGCCCCTAGTGGCTAGCCCTGGGTCTAGCAGCCTATGGCAGTGTCTGGTAAACACTGGTGGAGTCCTGGGTGGAAGAAGGTCTGGTTCTCACCAGGCCCCTCCTCTCCCACCCAGACAAAAGCTCAGTATGAGCAGACGCTGGCAGAGCTGCATCGCTACACTCC
...............................................................((((((((..(((....((.....(((((((.((((.(((.(((((......))))).))).((((.......))))......))))))))).)).)))))..))))))))............................................................................
..........................................................59...................................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR038861(GSM458544)
MM466. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577740(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189787SRR038859(GSM458542)
MM386. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTT..............................................................................21111.0011.003.00-1.004.00--1.00----------------------1.00----1.00-------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCT..................................................................................20110.0010.00-2.00---4.00-----1.00-1.00---------------------1.00----1.00-------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGGT...............................................................................22110.0010.003.00-3.00----2.00---------------1.00---------1.00--------------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGGTT..............................................................................2317.007.001.00-1.00-3.00-------1.00------1.00----------------------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGGTT..............................................................................2416.006.00-------------1.002.00-------------1.00-------1.00-1.00---------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGG................................................................................2216.006.003.00--------------2.00----1.00---------------------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGGTTC.............................................................................2516.006.00-6.00----------------------------------------------------------------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTTT.............................................................................2215.0011.004.00-----------------------------1.00-----------------------------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGGTTCT............................................................................2413.003.00------------------1.00--2.00--------------------------------------------
.................................................................................................................................................................................................................CAGTATGAGCAGACGCTGGCA....................2113.003.003.00-----------------------------------------------------------------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTTC.............................................................................2213.003.00------------------1.001.00---------------------------------1.00------------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTTCT............................................................................2313.003.001.001.00-1.00--------------------------------------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGT....................................................................................1812.002.00-------------------------------1.00-----1.00----------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGA................................................................................2212.002.00-----------------------------------------1.00----1.00-------------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGGTT..............................................................................2212.002.00--------------------------------1.00--------------------------1.00------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGG................................................................................2112.002.00----2.00-------------------------------------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTG.................................................................................2112.002.00-----------------1.00----1.00-------------------------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCT..................................................................................1912.002.00---------------------------------------1.00---1.00----------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGGA...............................................................................2212.002.00--2.00---------------------------------------------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGGTAT.............................................................................2412.0010.00----------------2.00-------------------------------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGGTTTAA...........................................................................2611.007.001.00-----------------------------------------------------------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGGTC..............................................................................2211.001.00--------------------------1.00---------------------------------------
...................................................................................................................................................................................................................GTATGAGCAGACGCTGGCAGAGCT...............2411.001.00------1.00-----------------------------------------------------------
.................................................................................................................................................................................................................CAGTATGAGCAGACGCTGGCAGAG.................2411.001.00-----------1.00------------------------------------------------------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTTCTC...........................................................................2411.001.00---1.00--------------------------------------------------------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGGTCC.............................................................................2311.001.00--------1.00---------------------------------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGGTA..............................................................................2411.001.00----------------------------------------------------1.00-------------
........................................................................................................................................................GGGTGGAAGAAGGTCTGGATT.............................................................................211.000.00-------------------------------------------------------1.00----------
...............................................................GGAGCTGGGTCTTGGGAGC........................................................................................................................................................................191.000.00---------1.00--------------------------------------------------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGGT...............................................................................2111.001.001.00-----------------------------------------------------------------
...........................................................................................................................................................................................................AAAGCTCAGTATGAGCAGACGCTGGCA....................2711.001.00-------------------------1.00----------------------------------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGG................................................................................2011.001.00------------------------------------------------1.00-----------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTC...................................................................................1911.001.00---------1.00--------------------------------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGGTTCT............................................................................2611.001.00------------------------------------------------------1.00-----------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGGTTT.............................................................................2411.007.001.00-----------------------------------------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGAA...............................................................................2311.002.00--------------------1.00---------------------------------------------
...................................................................................................................................................................................................................GTATGAGCAGACGCTGGCAGAGCTGCATC..........2911.001.00------1.00-----------------------------------------------------------
....................................................................................................................................................................................................................TATGAGCAGACGCTGGCAGAGCT...............2311.001.00----------------------1.00-------------------------------------------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTTCCC...........................................................................2411.003.00--------1.00---------------------------------------------------------
..................................................................................................................................................................................................................AGTATGAGCAGACGCTGGCA....................2011.001.00-1.00----------------------------------------------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGGTAA.............................................................................2411.0010.00---------------------------1.00--------------------------------------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGGT...............................................................................2311.001.00-------------------------------------------------1.00----------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCT..................................................................................1811.001.00----------1.00-------------------------------------------------------
..........................................................................................................................................................................................................................CAGACGCTGGCAGAGCTGCATCG.........2311.001.00--------------------------------------------------1.00---------------
...........................................................................................................................................................TGGAAGAAGGTCTGGTTCTCACC........................................................................2311.001.00----------------------------------------------------------1.00-------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGGG...............................................................................2111.001.00--------------------------------------------------------1.00---------
....................................................................................................................................................TCCTGGGTGGAAGAAGGTCTGT................................................................................2211.002.00--------------------------------------------1.00---------------------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGT...............................................................................2011.001.00-----------------1.00------------------------------------------------
........................................................................................CCCTAGTGGCTAGCCAC.................................................................................................................................................171.000.00---------------------------------------------------1.00--------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGTA...............................................................................211.000.00-------1.00----------------------------------------------------------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTTCA............................................................................2311.003.001.00-----------------------------------------------------------------
..................................................................................................................................................................................................................AGTATGAGCAGACGCTGGCAGAGCTGCAT...........2911.001.00------1.00-----------------------------------------------------------
......................................................................................................................................AAACACTGGTGGAGTCTCG.................................................................................................191.000.00------------------------1.00-----------------------------------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGGTTCTC...........................................................................2511.001.00-------1.00----------------------------------------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTC...................................................................................1811.001.00---------------------------------------------1.00--------------------
.................................................................................................................................................................................................................CAGTATGAGCAGACGCTGGCAGAGCT...............2611.001.001.00-----------------------------------------------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGA................................................................................211.000.00--1.00---------------------------------------------------------------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTTCTCA..........................................................................2511.001.00------------------------------------------1.00-----------------------
......................................................................................................................................................CTGGGTGGAAGAAGGTCTGGTCCT............................................................................2411.001.00--------1.00---------------------------------------------------------
........................................................................................................................................................................................................................AGCAGACGCTGGCAGAGCTGCA............2211.001.00----------1.00-------------------------------------------------------
.........................................................AGGGCAGGAGCTGGGACCA..............................................................................................................................................................................191.000.00---------------------------------------------------------1.00--------
.......................................................................................................................................................TGGGTGGAAGAAGGTCTGGTAA.............................................................................2211.001.00-1.00----------------------------------------------------------------
..................................................................................................................................................................................................................AGTATGAGCAGACGCTGGCAGAGCTG..............2611.001.00-----------------------------------------------1.00------------------
..................................................................................................................................................................................................................AGTATGAGCAGACGCTGGC.....................1911.001.00---------1.00--------------------------------------------------------
.....................................................................................................................................................CCTGGGTGGAAGAAGGTCTGGTTC.............................................................................2411.001.00-----1.00------------------------------------------------------------
.............................................................................................................................................................GAAGAAGGTCTGGTTCTC...........................................................................1820.500.50------------------------------------------------------------0.50-----
......................................................................................................................................................CTGGGTGGAAGAAGGT....................................................................................1630.330.33--------------------------------------------------------------0.33---
..............................................................................................................................................................................................................................CGCTGGCAGAGCTGCA............1630.330.33-------------------------------------------------------------0.33----
.............................................................................................................................................................................................................................ACGCTGGCAGAGCTGCA............1730.330.33---------------------------------------------------------------0.33--
....................................................................................................................................................TCCTGGGTGGAAGAAGG.....................................................................................1740.250.25----------------------------------------------------------------0.25-
............................................................................................................................................................................................................................GACGCTGGCAGAGCT...............1550.200.20-----------------------0.20------------------------------------------
..................................TTGTTAGGCTGCTGG.........................................................................................................................................................................................................1560.170.17-----------------------------------------------------------------0.17
.......................................................................................CCCCTAGTGGCTAG.....................................................................................................................................................1460.170.17------------------------0.17-----------------------------------------
...........................................................................................................................................................................................................................................GCATCGCTACACTCC1580.120.12-------------------------0.12----------------------------------------
.........................................................................................................................................................................GTTCTCACCAGGCCC..................................................................1590.110.11------0.11-----------------------------------------------------------
.............................................................................................................................................................................................................................ACGCTGGCAGAGCTG..............15100.100.10--------------------------0.10---------------------------------------

Antisense strand
ACTCTTTTATATGCTGTGCCTGATGTCACCTCCCTTGTTAGGCTGCTGGGGTCCTTGAGGGCAGGAGCTGGGTCTTGGGACTGATTGCCCCTAGTGGCTAGCCCTGGGTCTAGCAGCCTATGGCAGTGTCTGGTAAACACTGGTGGAGTCCTGGGTGGAAGAAGGTCTGGTTCTCACCAGGCCCCTCCTCTCCCACCCAGACAAAAGCTCAGTATGAGCAGACGCTGGCAGAGCTGCATCGCTACACTCC
...............................................................((((((((..(((....((.....(((((((.((((.(((.(((((......))))).))).((((.......))))......))))))))).)).)))))..))))))))............................................................................
..........................................................59...................................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR038861(GSM458544)
MM466. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577740(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189787SRR038859(GSM458542)
MM386. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
........................................GGCTGCTGGGGTCCTCCT................................................................................................................................................................................................ 181.000.00------------1.00-----------------------------------------------------