ID: hsa-mir-6742
GENE: TRIM11(1)
chr1:228584699-228584893-


(2)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(6)
B-CELL
(2)
BRAIN
(32)
BREAST
(36)
CELL-LINE
(5)
CERVIX
(2)
FIBROBLAST
(5)
HEART
(4)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(39)
SKIN
(1)
XRN.ip

Sense strand
AGTGTGCTGTTTCTCCTCCCCACATAGGACATCAAGGACGCCCTGCGCAGGTACGAACCCAGCCTCTCCTGGAGGGGGGGCAGGAGGGAGTGGGGTGGGACCCAGCTGTTGGCCATGGCGACAACACCTGGGTTGTCCCCTCTAGGGTCCAGGATGTGAAGCTGCAGCCCCCAGAAGTTGTGCCTATGGAGCTGA
......................................................................................((((.((((...(((((((.(((((((....))..))))).))))))).))))))))....................................................
...................................................................................84...........................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR189785SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189783DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR189787SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189786SRR029125(GSM416754)
U2OS. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038860(GSM458543)
MM426. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR040018(GSM532903)
G701N. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR037931(GSM510469)
293GFP. (cell line)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577738(Rovira)
total RNA. (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGT.................................................211266.0084.0051.0019.00-10.0016.00-13.006.003.0010.005.003.008.003.003.005.004.00--2.00-5.00-4.005.002.004.002.004.00-2.004.003.003.001.002.002.001.003.00--1.00-1.002.002.002.00--2.002.001.002.001.002.002.001.001.00-1.001.001.002.001.002.00-1.001.00-1.00-----1.00-1.001.00-1.00----1.00--1.00-1.00--1.00-1.00--1.001.001.00-1.001.001.00---1.00--1.001.00--1.00------1.00--1.00-1.00---1.00---1.00-1.00------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAG..................................................20184.0084.0066.00-3.00-----------2.00---5.001.002.00----1.00------------------------------1.00---------------------------------------1.00----1.00---------------1.00--------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTAGT.................................................23130.008.003.0011.00-2.00---2.00--4.001.00-1.001.002.00---1.00-----------------------------------------1.00----------------------------------------------------------------------------1.00-----
............................................................................................................................CACCTGGGTTGTCCCCTCTAGT.................................................22128.0021.004.003.00-1.00---1.003.00-------2.007.00-1.00-----2.00---------1.001.00--------------1.00--------------------------------1.00-----------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAG..................................................21121.0021.008.00-3.001.00-------1.00--------4.00---------------------------------------------1.00------------1.00---1.00-------------------------------------1.00----------------------
........................................................................................AGTGGGGTGGGACCCAGCTGTTT....................................................................................23115.003.00-----13.00--------------------------------------------------------------1.00------------------------------------------------------------------------1.00--
...........................................................................................................................ACACCTGGGTTGTCCCCTCTAG..................................................2218.008.006.00-1.00--------1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGA.................................................2118.0084.002.00----------------------1.00---1.00--1.00---------------------------------------------------------------1.00----------1.00-------1.00------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTTTAG..................................................206.000.006.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGATAG.............................................................................................205.000.001.00----------1.00----------------------------1.00-----------------------------1.00---------------------------------------------1.00---------------------------
..TGTGCTGTTTCTCCTCCCCAC............................................................................................................................................................................2114.004.00--3.00---------------1.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................GAGGGAGTGGGGTGGGCTA.............................................................................................194.000.00-----------------------------------------------2.00----------------------------------------------------------1.00---------------------------1.00---------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTAGA.................................................2314.008.001.00----------2.00-1.00----------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAGAAA...............................................2414.0021.00----------------------4.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCCAG..................................................203.000.00--2.00---------------1.00-----------------------------------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGTTG....................................................................................2313.003.00--------3.00---------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTA................................................2213.0084.00---------------------------1.00--1.00----------------------------------------------------------1.00------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCCAGT.................................................223.000.002.00-1.00---------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGTT.....................................................................................2213.003.00-2.00----------------------------------------1.00-----------------------------------------------------------------------------------------------------
.......................................................................................GAGTGGGGTGGGACCCAGCTGT......................................................................................2213.003.00-------------------------------------1.00-------------------------1.00-------------------------------------------1.00------------------------------------
...GTGCTGTTTCTCCTCCCACA............................................................................................................................................................................203.000.00--3.00---------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................GTGGGGTGGGACCCAGCTGTTG....................................................................................2213.003.00--------1.00----------1.00---1.00------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGC.................................................2112.0084.001.00-------------------------------------------------------------------------------------------------------------------------------------------1.00---
.................................AAGGACGCCCTGCGCAG.................................................................................................................................................1712.002.00---------------------1.00-------------------------------------------------1.00------------------------------------------------------------------------
......................CATAGGACATCAAGGACGCCCTGCGCAG.................................................................................................................................................2812.002.00---1.00---------------------------------1.00----------------------------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAA..................................................212.000.001.00---------------------------------------------------------------------------------------------------------------------------1.00-------------------
................................CAAGGACGCCCTGCGCAGGGT..............................................................................................................................................212.000.00-----------------------------------------------------------------1.00------1.00-----------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCCAGT.................................................212.000.00--1.00--------------------------1.00------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGGTGGT............................................................................................212.000.00----------------------------------------1.00--------------------------------------------------------------------------------------------------1.00----
........................................................................................................................................................................CCCCAGAAGTTGTGCCTA.........1812.002.00-----------------------------------------1.00-------------------------------------------------------------------------------------------1.00----------
.......................................................................................GAGTGGGGTGGGACCCAGCTGTTT....................................................................................2412.001.00-----2.00------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTTT...............................................2312.0084.00----------------------2.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTAT...............................................2312.0084.00------------------------------------------------2.00-----------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGTAT...............................................................................................182.000.00----------------------------------------------------------------------------------1.00---------1.00---------------------------------------------------
......................................................................................................................................................AGGATGTGAAGCTGCAGC...........................1812.002.00----------------------------------------------------------2.00-------------------------------------------------------------------------------------
..TGTGCTGTTTCTCCTCCCCACA...........................................................................................................................................................................2212.002.002.00-----------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGAA................................................2212.0084.00-------------2.00----------------------------------------------------------------------------------------------------------------------------------
..................................AGGACGCCCTGCGCAGGGCC.............................................................................................................................................201.000.00---------------------------------------1.00--------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGTAC...............................................................................................181.000.00---------------------------------------------------------------------------------------1.00--------------------------------------------------------
.......................................................................................GAGTGGGGTGGGACCCAGCTGTAG....................................................................................2411.003.00-----------------------------1.00------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGAT................................................2211.0084.00-------------------------------------------------------------------------1.00----------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTATG.................................................211.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................CTCTCCTGGAGGGGGGGTC.................................................................................................................191.000.00---------------------------------------------------------------------------------------------------------------------------------1.00--------------
.........................................................................................GTGGGGTGGGACCCAGCTGTCG....................................................................................221.000.00-----------------------------1.00------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTCGT.................................................2111.001.00-----------------------------------------------------1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGATGTGAAGCTGCA.............................1711.001.00------------------------------------------------------------1.00-----------------------------------------------------------------------------------
......................CATAGGACATCAAGGACGCCCTGCGC...................................................................................................................................................2611.001.00----------------1.00-------------------------------------------------------------------------------------------------------------------------------
.....GCTGTTTCTCCTCCCCACA...........................................................................................................................................................................1911.001.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................GAGTGGGGTGGGACCCAGCTGTAT....................................................................................2411.003.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................GTGGGGTGGGACCCAGCTGTTGA...................................................................................2311.003.00------------------------------------------1.00-----------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGT......................................................................................2111.001.00-----------------------------------------------------------------1.00------------------------------------------------------------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCCAGT.................................................231.000.00-----------------------------1.00------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGTGT..............................................................................................191.000.00-------------------------------------------------------------------------------------------------1.00----------------------------------------------
......................................................................................................................................................AGGATGTGAAGCTGCAG............................1711.001.00---------------------------------------------------------1.00--------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGATCG.............................................................................................201.000.00---------------------------------------------------------------------------------------------------------------------------1.00--------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTGA...............................................2311.0084.00--------------------------------------------------------------------------1.00---------------------------------------------------------------------
..........................GGACATCAAGGACGCC.........................................................................................................................................................1611.001.00----------------------------------1.00-------------------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGTAT....................................................................................2311.001.00----------------------------------------------------------------------------------------------------------------------------------1.00-------------
........................................................................................AGTGGGGTGGGACCCAGCTGCT.....................................................................................221.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGAGGG.............................................................................................201.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTTTAG..................................................211.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................TGGGGTGGGACCCAGCTGTTGGC..................................................................................2311.001.00----------------------------------------------------------------------------------------------------------------------------------------1.00-------
............................................................................................................................CACCTGGGTTGTCCCCTCTAGA.................................................2211.0021.00----------------------------------------------------------------------------1.00-------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAT..................................................201.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................GAGGGAGTGGGGTGGGCTAA............................................................................................201.000.00------------------------------------------------------------------------------------------------------------------------------1.00-----------------
.........................................................................................GTGGGGTGGGACCCAGCT........................................................................................1811.001.00---------------------------------------------------------------------------------1.00--------------------------------------------------------------
..............................................................................................................................CCTGGGTTGTCCCCTCTAGT.................................................201.000.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------
.......................ATAGGACATCAAGGACGCCCTGCGCAGGCACG............................................................................................................................................321.000.00---------------------------------------1.00--------------------------------------------------------------------------------------------------------
......................................................................................................CAGCTGTTGGCCATGGCGACA........................................................................2111.001.00--------------------------------------------------------------------------------------------------------------------------------1.00---------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTAAA.................................................231.000.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGTAG....................................................................................2311.001.00-------------------------------------------1.00----------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGAAA...............................................2311.0084.00-------------------------------------------------------------------------------------------------------------1.00----------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTT................................................2211.0084.00------------------------------------------------------------------------------------------------------------------------1.00-----------------------
........................................................................................AGTGGGGTGGGACCCAGCTGAA.....................................................................................221.000.00----------------------------------------------------------------------------------------------------------------------1.00-------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCCTAG...................................................211.000.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCGAG..................................................201.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTAA...............................................2311.0084.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGAG................................................2211.0084.00--------------------------------------------------------------------------------------1.00---------------------------------------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTG.....................................................191.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTGG..................................................221.000.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------
..TGTGCTGTTTCTCCTCCCCAAT...........................................................................................................................................................................221.000.00-----------------------------------------------------------------------------------------------------------------------1.00------------------------
......................................................................................................................................................AGGATGTGAAGCTGCAGAA..........................1911.001.00-------------------------------------------------------------------------------------------1.00----------------------------------------------------
.......................................................................................GAGTGGGGTGGGACCCAGCTGTT.....................................................................................2311.001.00-----------------------------------------------------------1.00------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAAG.................................................221.000.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCT....................................................1811.001.00--------------1.00---------------------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGGCTA.............................................................................................201.000.00------------------------------------------------------------------------------------------------------------------1.00-----------------------------
......................................................................................................CAGCTGTTGGCCATGG.............................................................................1630.330.33-----------------------------------------------------------------------------------------------------------------------------------------------0.33
...............................................................................................................................................................AGCTGCAGCCCCCAGA....................1690.110.11---------------------------------------0.11--------------------------------------------------------------------------------------------------------

Antisense strand
AGTGTGCTGTTTCTCCTCCCCACATAGGACATCAAGGACGCCCTGCGCAGGTACGAACCCAGCCTCTCCTGGAGGGGGGGCAGGAGGGAGTGGGGTGGGACCCAGCTGTTGGCCATGGCGACAACACCTGGGTTGTCCCCTCTAGGGTCCAGGATGTGAAGCTGCAGCCCCCAGAAGTTGTGCCTATGGAGCTGA
......................................................................................((((.((((...(((((((.(((((((....))..))))).))))))).))))))))....................................................
...................................................................................84...........................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)
SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)
SRR189785SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189783DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)
SRR189787SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR326282(GSM769512)
Dicer mRNA was knocked down using siDicer, to. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189786SRR029125(GSM416754)
U2OS. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038860(GSM458543)
MM426. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR040018(GSM532903)
G701N. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR037931(GSM510469)
293GFP. (cell line)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577738(Rovira)
total RNA. (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR037938(GSM510476)
293Red. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................GAGGGGGGGCAGGAGTCC.......................................................................................................... 181.000.00--------------------------------------------------------------------------------------------------------------1.00---------------------------------
...................................................TACGAACCCAGCCTCTCCC............................................................................................................................. 191.000.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................TACGAACCCAGCCTCTC............................................................................................................................... 171.000.00----------------------------------1.00-------------------------------------------------------------------------------------------------------------
......................................................GAACCCAGCCTCTCCTTTTT......................................................................................................................... 201.000.00------------------------------------------------------------------------------------------------------------------------------------1.00-----------
................................................................................................................CCATGGCGACAACA..................................................................... 1430.330.33----------------------------------------------------------------------------------------------------------------------------------------------0.33-
.................................................................................................................CATGGCGACAACA..................................................................... 13100.100.10----------------------------------------------------------------------------------------------------------------------------------------------0.10-