dme-mir-995

dme-mir-995

No Changes

There are many substitutions in the miR* region of D. ananassae through D. grimshawi. All of these substitutions are supported by trace reads and sRNAseq reads (for D. pseudoobscura).

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chr3R

4901740

A

3

0

0

0

0

0

0.481

0

0.519

0

27

Ambiguous - Suggested base change does not agree with neighboring species

5' MOR

Uncorrected Alignment:

dme-mir-995

Species	Coordinate	Alignment
dm3	chr3R:16561630-16561749 +	TTGACG---------------AATGTCA-------------------------TCCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------GTA----ATCCGTAGCACCACATGATTCGGCTTCGTGGTACA-----------------GGATATCATCGGT-TTTTGCTA
droSim1	chr3R:4901723-4901838 -	-----A---------------AATGTCG-------------------------TTCAC--------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------AAA----GTCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGATATCATCGGT-TTTTGCTA
droSec1	super_27:174263-174377 -	---------------------AATGTCG-------------------------TTCAC--------------------------CTGTACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCC-----------GAA----GTCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGATATCATCGGT-TTTTGCTA
droYak2	chr3R:5351033-5351167 +	TGGACGTTGCCATCCTGGATTAAACTCA-------------------------TTCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CCGTTTCT-----------AAA----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGACATCAGCAAT-TTTTGGTA
droEre2	scaffold_4770:5101897-5102016 -	CTGACG---------------AATGTCA-------------------------TTCAC--------------------------CTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCG----CTGTTTTC-----------AGG----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGACATCAGCGGT-TTTTGCTA
droAna3	scaffold_13340:13021664-13021782 -	TTGACA---------------AATGTCA-------------------------TTCGC--------------------------CTGTCCTACGCAGCCCGGATTCTGTGGGAGCTGCG----CCGTTCTT-----------TCT----ATCCGTAGCACCACATGATTCGGCTTCGTGGTGCA-----------------GGGCATCATCC-T-GTTGGCTG
dp4	chr2:5900237-5900376 +	TTGACG---------------AATGTCA-------------------------AACACCTC-GCAGGCTCTGCAGCAGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCG----CTGTGTTC---------TTAAA----AGCCGTAGCACCACATGATTCGGCTGCGTGGTCAG-----------------CCACACCTTCAG--------TA
droPer1	super_19:1637056-1637197 +	TTGACG---------------AATGTCA-------------------------AACACCTC-GCAGGCTCTGCAGCAGACCCTGCTGCACAACGCAGCCCGGATTCTGTGTGTGCTGCG----CTGTGTTC---------TTAAA----AGCCGTAGCACCACATGATTCGGCTGCGTGGTCAG-----------------CCACACCTTCAGT-ATC-----
droWil1	scaffold_181108:2305175-2305323 -	TTGACG---------------AATGTCAAATTTTCTGACTCCTGCAACTCATGTAAGG--------------------------CTTCACCAAGCAGCCCGGATTCTGCGAGTGCTGCG----CTACAACA-----------AGAACTAAGACGTAGCACCACATGATTCGGCTTCATGGTGAA-----------------GTACATCGCAACG-TCATCGTG
droVir3	scaffold_13047:12148438-12148588 -	TTGACG---------------AATGTCA-------------------------AACGGCTTGGCCGGCTCAACA---------GCTGTACAACGAAGCCCGGATACTGTGTGTGTTGCG----CTGTTTA------------GAG----GTACGTAGCACCACATGATTCGGCTTCGTGGTGCACGCAACTGCAACAGA--GGGCGTCAACGGT-ATTTATTA
droMoj3	scaffold_6540:29636954-29637102 +	TTGACG---------------AATGTCA-------------------------AACAGCTTGGCTGGCTTGGTA---------GCTGAACTACGAAGCCCGGGTTTTGTGTGTGCCGCG----CTGTTTTG-------------A----GTACGTAGCACCACATGATTCGGCTTGGTAGTACAGGCTCATTCAACAAATTAGG---CATCAAT-TTTATAGA
droGri2	scaffold_14830:1051305-1051441 +	TTGACG---------------AATGTCA-------------------------AAT---------------------------GCTGTACAGTGAAGCCCGGATTCTGTGTGTGCTGCGTTTGCTGATTTGCCATACACATAAAT----ATACGTAGCACCACATGATTCGGCTTCGTGGTGCTAG---------------CAACTCCATCGCCAGTTAGATA