dme-mir-961

No changes

This miRNA belongs to the dme-mir-959 - 964 cluster
This miRNA appears confidently lost from the 3 Drosophila group species.
- The D. virilis ortholog could not be found by searching virilis trace data nor genome assembly.
- The D. mojavensis and D. grimshawi orthologs look questionable based on substitution patterns within the mature and star regions.
- It should be noted that the adjacent miRNA in this cluster, mir-960, has confident D. mojavensis and D. grimshawi ortholog but missing D. virilis ortholog.

dme-mir-961

Species	Coordinate	Alignment
dm3	chr2L:5641176-5641294 +	GTAGTGAGCTC--GT-------T------ATCAAG-----GGCCGAGTTACCTTTGATCACCAGTAACTGAGATT-GT--TTCTGATA---CGGTTTCGTTTTCTGGCAATCAA-AAGAACTTGGACTCGA-CTTGAA----------------------------------------------------------TTCAACTAC
droSim1	chr2L:5434262-5434381 +	GTAATGTGCTC--GT-------T------ATCATG-----GGCCGAGTTACCTTTGATCATCAGTAAGTGAGATT-GT--TTCTGATA---CGATTTCGTTTTCTGGCAATCAA-AGGAACTCGA-CTCGA-CTTGAA-TC-------------------------------------------------------TACAACTAC
droSec1	super_5:3718917-3719036 +	GTAATGTACTC--TT-------T------ATCAAG-----GCCCGAGTTACCTTTGATCACCAGTAAGTGAGATT-GT--TTCTGATA---CGATTTCGTTTTCTGGCAATCAA-AGGAACTCGA-CTCGA-CTTGAA-TC-------------------------------------------------------TACAACTAC
droYak2	chr2L:13552021-13552135 -	GAAAA----TCTAAT---------------TCATG-----GGTCGAGTTACCATTGATCACCGGTTACTGAGGTT-GT--TCCTTCTT---TGGCTTCGTTTTCTGGCGATCAA-AAGAACTCGA-CTCGA-CTCGAA----------------------------------------------------------TCCAACCAA
droEre2	scaffold_4929:5729649-5729755 +	TG-----------AT---------------TCATG-----GGTCGAGTTACCATTGATCACCGGTTACTGAGGTT-GT--GCCACATT---CGGCTTCGTTTCCTGGCGATCAA-AAGAACTCGA-CTCGG-CTCGAA----------------------------------------------------------TCCCAGTAC
droAna3	scaffold_12916:11084979-11085099 +	ACAAAGGACTA--CAGGAAAGCG------ACT-TA----AGTCCGAGCACTATTTGATCACTGGTTACTGAGGTT-GT--TTTGTCAT---AAGCTTCGTTTTCTGGCGATCAA-ATACGCTCGA-CTT-----TGGG----------------------------------------------------------CCCAACCAC
dp4	chr4_group4:3182338-3182458 -	GAGGAGAGCTG--TT---------------TCGCCGGACAGTCAGAGTTTGATTTGATCTCTAGTTACTGGGCTTTGA--TTCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGA-CTCG------AG----------------------------------------------------------TGCCACAAA
droPer1	super_10:2201269-2201389 -	GAGGAGAGCTG--TT---------------TCGCCGGACAGTCAGAGTTTGAGTTGATCTCTAGTTACTGGGCTTTGA--TTCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGA-CTCG------AG----------------------------------------------------------TGCCACAAA
droWil1	scaffold_180708:8625990-8626125 -	GTGTGAAACT-----------------------TG----AGTTTGAGTTTACATTGATCACTGGTTAGTGAGGTT-CAAAGTCAGACC---CAACTTCGTTATCTGGCGATCAA-ATAAACCTGG-CTTACA----AAAGCTATAATTGCTGAAATGGATACACGT-----------------------T------T---TCTAT
droVir3	scaffold_12963:3615378-3615429 +	G---------------------------------------------------------------------------------------------TTTCATTTTTCAGTGAATTA-AACAACTCAA-TTTACACACACA----------------------------------------------------------CACACACAT
droMoj3	scaffold_6500:14018312-14018360 +	ATTTAAATGTA--TT---------------CCGGTCTATGGCG--------------------TTTACGG--------------------------TCGTTTTGTCGTA---------------------------------------------------------------------------------------------CTC
droGri2	scaffold_15252:3147112-3147237 +	GTTGTTAGCAG--CCACATCTCTGAATTGAAT-TG----GATTCGTT-----------------TTACT--------------------------TTCTTTTATTACTGAAATG-AGTTGTTCAG-TTC-T-TTTAAA-TT-------------------------TCAGTCTACAAACTAAGAGCAGGTTACTTTCATAACACA