dme-mir-959

No changes

This miRNA belongs to the dme-mir-959 - 964 cluster
This miRNA appears confidently lost in the 3 Drosophila group species.
- The D. virilis ortholog could not be found by searching virilus trace data nor genome assembly.
- It should be noted that the adjacent miRNA in this cluster, mir-960, has confident D. mojavensis and D. grimshawi ortholog but missing D. virilis ortholog.

dme-mir-959

Species	Coordinate	Alignment
dm3	chr2L:5640925-5641052 +	CGAATTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TCAG--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAACTGCAATGATT------------ATCG----------------------------------
droSim1	chr2L:5434012-5434138 +	A--ATTAA-ATAGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGC--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAGCTGCAAGGATC------------ATCG----------------------------------
droSec1	super_5:3718667-3718793 +	A--ATTAA-ATAGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGC--GGAGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGTTTAAAGAAGCTGCAAGGATC------------ATCG----------------------------------
droYak2	chr2L:13552255-13552381 -	CGAGTTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGACAAAGACCTTTCCT----TGC--GGCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAGAAACTGCAAGGATC------------ATCG----------------------------------
droEre2	scaffold_4929:5729400-5729526 +	CGAGTTAA-ATTGATTTTAACTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGACAAAGAGCTTTCCT----TGC--GGCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAGAAACTGCAAGGAGC------------AACG----------------------------------
droAna3	scaffold_12916:11084702-11084849 +	GAAGTTAA-ATTTATTTCAATTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTCCT----GGA--GCCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAAAACCAGCACAATGT------------ATCGGCCAATAGGCCAATTAACCCG-------------
dp4	chr4_group4:3182582-3182745 -	TGGTTTTC-GTTTA------------------------CGTTTTTT-TTTT--------GTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGA--GAAGCCTTTGTCATCGCGGGTATTATGCAACA---------TAGCTCAAAAGCGCAACAAAATACACA-------------AAA--------AATATACACGTAAATGTGTGTGG
droPer1	super_10:2201518-2201669 -	TGGTTTTC-GTTCA------------------------CGTTTTTTTTTTT--------GTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGA--GAAGCCTTTGTCATCGCGGGTATTATGCAACA---------TAGCTCAAAAGCGCAACAAAATACACA-------------AAA--------AATATACACG-------------
droWil1	scaffold_180708:8626283-8626424 -	AGTGAAAA-AGTGACTTAAGTTTT-----------------------------------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACAAAATGT---TTACCAATCGCCTTTGTCATCGGGGGTATTATGAAATA---------TAGCTCAAAAGTTCAACATAATAATTAAGAATTAACTTTG----------------------------------
droVir3	Unknown	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:14018136-14018207 +	TGATGTAATAAGTGTTTTAGCTTT-----------------------------------------AAGTTGTGCCATT-------------------------------------------------------------TTAAATTG---------AAAAAAGTG-AAGATTGAAAATTG------------ACTA----------------------------------
droGri2	scaffold_15252:3146904-3147001 +	CAAAGAGT-AGCAGGAGTAGTTAAGTTGTAGTTTCTTACGGTTTTTTTTTTAATAACATGCT--------------TTAGTGCT--------------------------------------------------------------TCAATGTAGGTGGCTCAA---------GATATTT------------GTTG----------------------------------