dme-mir-4980
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2R_random | 948262 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0.375 | 0.625 | 0 | 8 | Genomic Error | 3' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:3673811-3673963 + | CAAAAACGA--------AAGAGGGGAAGAGGCTGAGAGCGGGAAAGTGAGAAGTAGAGAGCGCAGATAGGGAGTGGG-AGCTTAT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCGTTCCAAC-C-----CCCCACCTCTCT-------TTCCC---TCTTTTGGCATTGCAAAA |
| droSim1 | chr2R_random:948112-948272 + | CAAAAGCGGATGAGGTGAAGAGGGGAAGAGGCGGAGAGCGGGAAAGGGCGAAGAAGAGAGCGCAGACAGGGAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCATTCCCCC-GCA---CCCCACCT--CT-------TTCCC---TCTTTTGGCATTGCAAAA |
| droSec1 | super_1:1330268-1330428 + | CAAAAGCGGATGAGGTGAAGAGGGGAAGAGGCGGAGAGCGGGAAAGGGCGAAGAAGAGAGCGCAGACAGGGAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGCCAACTTCCGTT--CT----GCGTTTCATTCCCCC-GCA---CCCGACCT--CT-------TTCCC---TCTTTTGGCATTGCAAAA |
| droYak2 | chr2L:16346698-16346837 + | CAAAAGGGG--------AAGA--------CGCGGACAACGGGAAAGGGCAAACACGAGAGCGCAGGAAGGCAGTGGG-AGCTTGT----------------------------A-----------------CCGTTATAAAGTCAAATTCCGTT--CT----GTGTTTCTTTTCACC-------CCCCACCT--CT-------T--CC---TCTCTTGGCATTGCAAAA |
| droEre2 | scaffold_4929:18933782-18933931 - | CCAGAGGGG--------AAGGAGGGAAGAGGCGGACAGCGGAAAAGGGCGAA-CAGTGAGCGCAGGAAGGGAGTGGG-AGCCTGT----------------------------A-----------------CCGTTATAAAGTCAATTTGCGTT--CC----GCGTTTCTTTCCACC-C-----CCCCACCT--CT-------TCATC---TCTTTTGGCATTGCAAAA |
| droAna3 | scaffold_13266:10179298-10179443 + | AGCAGACGA----GGTGCAGGGGGAGAATAAAAATAACCAAAAAAAATAATAAGATAAAGTGAACTAAGAGAGTTGG-AATTT------------------------------------------------CCATATCAGCACCCATTTTCGAT--TT----ACATTCTCCTCCACCCT-----CCCCACCC--------------CACCTGCTG---CTGGTGCA--A |
| dp4 | chrXL_group1e:1273472-1273542 - | AGAGAGAGA--------GAGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGTGATGGTTGGGTGTGGG-AG----------------------------------------------------------------------------------------------------------------------------------------------------- |
| droPer1 | super_4:2253896-2254021 + | CAAGAGAGA--------GAGAGAGAGAGAGAAAGAGAGCGAGAAAGATAGAAGCAGAGCGAGAGCGAAAGTGATAGA-TAT--------------------------------A-------------TAGTTTATACCAAACTTTTTTAATAAT--CC----ATGTTCTTTTCGATGTT-----T---------------------------------ATTTTC----- |
| droWil1 | scaffold_181096:5834838-5834931 + | AGAGACAGA--------GAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAAGAGTGGTGAGTGGTGGAAGGGGGTGGG-GGCCAAT----------------------------A-----------------TTGTGCTAGTGCTGAAT--------------------------------------------------------------------------------- |
| droVir3 | scaffold_12963:19208738-19208883 + | TTAGTAAGA--------GAGAGAGAGAGAGAGAGGGAGAGCCAGCGAGTA--ATAGAGAGCAC---------ATGCG-AGCATAA----------------------------A-----------------CCGGTTTGAGCGC--TCTCCGCTGGCTATGCGCGCT----CCCAGG-C-CAGCGCTCACCT--GTGTACAAGTTCAC---TTTGTTGTTGTTG----- |
| droMoj3 | scaffold_6496:13778911-13779004 + | CAACAGAGA--------CAGAGAGAGAGAGAGAGAGAGCGGGAGAGAGAGAAAGAGAGAGAGA-----GAGAGAGGGAGGCCATG----------------------------G-----------------CTGTAGCTGAGCTGCTT-----------------------------------------------------------------------------ACGT |
| droGri2 | scaffold_15110:15752678-15752830 - | AGTGAGAGA--------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------------GAGAGCTGGG-CACTTGTGTCTGGGGCTGTGCTCATGCAAAAATAAATGCGAACTGTGTGCAGATCGTAA---------------AT--TA----AAGTTTCTCTCGCTC-C-----CCCTATTT-------------CTC---TGTTC--CTGTT------ |