dme-mir-4971
Changes
>dme-mir-4971
GGAAGGGCCAACTTCTCGGCCCTCGACACGGTGGATGAGCTTGTCAGTGGCGGATCCAGGAGCAATTCTGCCGCTGGCGACAGATCATCGGCCACTGACAATGCCCATTCACTGTTCGAGGAGATCATGTCGGGCTCGGATG
>wop21h10.b1:281-423
GGAAGGGCCAATTTCTCGGCTCTCGACACGGTTGATGAGCTTGTCAGTGGCGGATCCAGGAGCAATTCTGCCGCTGGCGACAGATCATCGGCCACTGACAATGCCCAGTCACTGTTCGAGGAGATTATGTCGGGCTCGGATG
The ortholog was found in only one of the 7 lines, nc48. It is still strange that the MAF still reports a better peices of the ortholog on the 3' end.
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:3463274-3463415 - | GGAAG-GGCCAACTTCT---CGGCCCT--------CGACACGGTGGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG |
| droSim1 | wop21h10.b1:281-423 + | GGAAG-GGCCAATTTCT---CGGCTCT--------CGACACGGTTGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCAGTCACTGTTCGAGGAGATTATGTCGG--------GCTCGGATG |
| droSec1 | super_129:25371-25512 - | GGAAG-GGCCAACTTCT---CGGCCCT--------CGACACGGTTGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCAGTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG |
| droYak2 | chrU:14964015-14964156 + | GGAAG-GGCCAACTTCT---CGGGCCT--------CGACACGGTGGATGAGCTTGTCAGTGGCGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCACTCACTGTTCGAGGAGATCATGTCGG--------GCTCGGATG |
| droEre2 | scaffold_4929:3498112-3498253 - | GGAAG-GGCCAACTTCA---CGGGCCT--------CGACACGGTGGATGAGCTTGTCAGTGGTGGATC------CAGGAGCAATTCTGCCGC-------TGGCGACAG--ATCATCGGCCA--CTGACAATGC----------------------CCACTCGCTGTTCGAGGAGATCATGTCGG--------GCTCGGATG |
| droAna3 | scaffold_12943:2497935-2498076 + | GGCAG-AGCCAACTTCG---GAGCCCT--------TGAAACGGTCGACGAGCTTGTCAGTGGCGGCTC------CATAAAGAATCCTGCCGC-------TGGCGACAG--ACAGTCGGCCA--CTGACAACGC----------------------GCACTCGCTGTTCGAGGAAATAATGTCTG--------GCTCCGACG |
| dp4 | chr4_group3:936699-936854 - | GGAGT-GCTCGTCTACG---TGGTTTTGCCCCACGCAATACCATTGATGAGCTGGTCAGTGGTGGCTCCTCCGCCATTAGCAATTCTGCCGC-------TGGCGACAG--ATTGTCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCTGATG |
| droPer1 | super_1:2415168-2415323 - | GGAGT-GCTCGTCTACG---TGGTTTTGCCCCACGCAATACCATTGATGAGCTGGTCAGTGGTGGCTCCTCCGCCATTAGCAATTCTGCCGC-------TGGCGACAG--ATTGTCGGCCA--CTGACAATGC----------------------CCATTCACTGTTCGAGGAGATCATGTCGG--------GCTCTGATG |
| droWil1 | scaffold_189765:461-602 - | GTAAC-GATAGACGGAG---ATACCTT--------CGAGGTGGTGGACGAGTTCGTCTACCTCGGATC------CTTGTTGATGGCTGACAA-------CAATG----------TTAGTCG--GGAAATACGA----------------------AGGCGCATTATCAGCGGAAGTCGTGCCTACTATTGGCTCCAGAAGA |
| droVir3 | scaffold_12963:15952027-15952160 - | ATTAGATGCCGATTGCGGTTCGTCCAT--------CAAGTCTGCGGCTGAGCTTGTCAGCGCCGT---------------CAATGCTGCCGC-------TGGCGACAG----CCTCGGC-G--CTGACAAGGA----------------------GCATGCCATGTTTGAGTATTTCCTCAACG--------AAGATGACG |
| droMoj3 | scaffold_6473:12510219-12510341 + | GGTTT-G----------------------------------------TGTGTGTGTGTGTGGTGGAACTTC---AATGCGAACCT------CTTGCCACAATCGAGTGCAATTAACTGCCA--TGATATATGGCCAATCCCA-------------------TATGCAGACGGCGACCGAGTCGAA-------GTTCGGCTG |
| droGri2 | scaffold_14853:4216060-4216150 - | ------------------------------------------------------------------------------------TCGACCGC-------TGGCCACAA--ATGGCCGGACAGACAGACA-------GACAGACAGACAGACAGACAGACTCACTGACATAATTGATCATATC----------GCTTATACG |