dme-mir-4965
No changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chrX_random | 4339106 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.353 | 0 | 0.647 | 0 | 17 | Ambiguous - Suggested base change does not agree with neighboring species | Loop |
Uncorrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:16500125-16500242 + | GTATTCGCAGTAC-AAGCACAAGGTGATCGATGGGAGATGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCAGGTTTCATCCATACAAATGTGTTTG |
| droSim1 | chrX_random:4339044-4339160 + | GTATTCGCAATAC-AAGCACAAGGTGATCGATGGGAGCTGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCA-GTTTCATCCATGCAAATGTGTTTG |
| droSec1 | super_17:323461-323577 + | GTATTCGCAATAC-AAGCACAAGGTGATCGATGGGAGCTGA----GCGCCTGA--TGTGATGATGAAGTAGATCGATCACACCAC--ACACTCACTCA--------------------------CCCA-GTTTCATCCATGCAAATGTGTTTG |
| droYak2 | chrX:10606276-10606397 + | GAATTTAGAATAA-AAACAAAAGGTGATCGATGGGAGCTGACCTTGAGCCTGAGCTGAGATGATGAAGTAGATCGATCACAC-AC--TCACTCACTCA--------------------------CTCA-GTTTCATCCATGCAAATTTGTTTG |
| droEre2 | scaffold_4690:6858711-6858812 + | CCC-----AATAA-AACCAAAAGGTGATCGATGGGAGCTGA----G--CCTGA--AGTGATGATGAAGTAAATCGATCACA-------CACTCACT------------------------------CA-GATTCATCCATGCAAATTTGTTTG |
| droAna3 | scaffold_13337:17013621-17013746 + | GAAATCTCAGCAGCAAGCTCAG-CGGATCG---GGTGTTGG----A--GGTGG--TCTGCCATTGACGAAGAGCAACAGCACCAA--TTCCTTCC---AGGAGCATAGCGCTCCCAAGC----------GTCGTCCCAGTATGGGTGCCTTGG |
| dp4 | chrXL_group1a:8134511-8134553 - | ACT------------------------------------------------------------------------------CCAC--ACACACACACA--------------------------CACA---GACAGACATATAAAGGA-CATG |
| droPer1 | super_5:779941-779973 + | ACACTCGCACTCC-C---ACAAGAAGAGCAGCAGTAG-------------------------------------------------------------------------------------------------------------------- |
| droWil1 | scaffold_180698:6476640-6476654 + | ATTT------------------------------------------------------------------------------------------------------------------------------------------GAATGTGTGTG |
| droVir3 | scaffold_13042:4246856-4246902 - | CAC-----------------------------------------------------------------------------AC-ACACACACACACATG--------------------------TACAGCTTTCACTCATGCATATTTGTT-- |
| droMoj3 | scaffold_6500:26586811-26586907 + | GCATTTGCACTG------------------CTCGAAAATGA----GCAATTGC--AAAGATCATTG-----------CACA---A--TACATTGC---AGAGAAATACTGCACAAAATAATTTAGTTA-ATTT------------TAAGTTGA |
| droGri2 | scaffold_15245:5234538-5234618 - | GCAAAATGAACAC-----AAAAACTGTTG------------------------------------------------CATACCAC--ACACTAACTG--T--AAATATCA--------------CATTTTTATTATTCTTATAATTATTAATA |