dme-mir-4964
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chrX | 7058055 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0.333 | 0 | 0.667 | 9 | Genomic Error | miR |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:8859818-8859960 + | TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTATATTTTTTTATATGGTACGTATTTATTTGTCTGCAAATGGCTGCCAAG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT |
| droSim1 | chrX:7057967-7058102 + | TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTATATATATTTATA-------TACGCATTTGTCTGCAAATGGCTGCCATG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT |
| droSec1 | super_34:222375-222488 + | TCGCCATGCTTCGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTTTATATATT-----------------------------TGGCTGCCATG-----------------------------------GAGT---------------------GCTACATAATCAATTTGTTTG-TT |
| droYak2 | chrX:12451967-12452096 - | TTGCCATGCTTGGACAATT----------------------------TT---------------------------TGAATGGTCCTTTT----------CATGCCCAAGG---------------------CGAATAAATAT------------GTATTTATGTGTAGATA-------------TATGTATTTGTCTGAAAATGGCTGCCAAG-----------------------------------GAGT---------------------GCTACATAATCAATTTGCTTA-TT |
| droEre2 | scaffold_4690:6251913-6252052 - | TTGCCATGCTTGGACAATT----------------------------TT---------------------------TGAATGGTCCTTTC----------CATCCCCAAGG---------------------CGAATAAATATGTTTGTGTGTACGAGTATATATTTATA---------------TATGTATCGGTCTGCAAATGGCTGCCAAT-----------------------------------GAGT---------------------GCTTCAAAATCAAATTGTTTG-TT |
| droAna3 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| dp4 | chrXL_group1e:8134181-8134346 + | TTTCCATGCTTGGACAATT---------------------------CTT---------------------------TGAACGGTCGTCCCT----TTTTGCCAGCCCAAGGGGGGAGGGATGGGGGGGGGGGGGAATAAATAT--------------ATCAACAA----AAA-------------TAC--------------------------TCGTAAGGCGAATAATGGCAACGTCTGGGGTGAGC----GATTGAGAGTTGTATCTGGAAGCTATATAATC------------- |
| droPer1 | super_13:433852-434017 - | TTTCCATGCTTGGACAATT---------------------------CCT---------------------------TGAACGGTCGTCCCGCCCGGTTTGCCAGCCCAAGGGGC----GGCGGGGGGAGGGGGGAATAAGTAT--------------ATCAACAA----AAA-------------TAC--------------------------TCGTAAGGCGAATAATGGCAACGCCTGGGGTGAGC----GATTGAGAGTTGTATCTGGAAGCTATATAATC------------- |
| droWil1 | scaffold_181150:832777-832852 + | ATGTCTTCCATTCCCTATT----------------------------TG---------------------------CGTATTTTCTT------------------TCAGTA---------------------TAAATGAATAT------------GTATGAGTCG----AAA-------------TAC--------------------------CTATA------------------------------------------------------------------------AATG-AT |
| droVir3 | scaffold_12726:2732407-2732514 + | TGGA------TCAACAAAT----------------------------GCCGCACATTTCTTTCTTGCTTTCGTTCACAATTTCTCTT------------------GTAATA---------------------TAATCAAT-TT------TT----ATTCAATTC-------------------------------------------------------------------------------------ATAC---------------------GATTCACATTCAATTCGTTTGACT |
| droMoj3 | scaffold_6500:9117978-9118115 - | CA----AGCTGCGACTATGTAATTAAAATTGTATGTATCAGCGGGTC-T-----------------------AT----------------------------TGCTATGTG---------------------TGTATAGGTGT------------GTGTGTGTGTGTATG---------------TGTGTGTATGTGTGCATATACAAAGCCAT-----------------------------------AATA---------------------GCATAAAACTCGATAAGCCTG-GC |
| droGri2 | scaffold_15110:597989-598133 + | TCGCCATATTTCGTTGAAT---------------------------T-C-----------------------TT----CGCCATATATCG----------TATGATTT---------------------------ATATATAT------ATATATAAATATATATATATATTTCGGCTCCAAATATTTTTTATATTTTGCAAAGACTTGCTGTG-----------------------------------G--TTTTTCATAAGTGAGTTTGAAT-----------------ATTG-TA |