dme-mir-4961
Changes
>dme-mir-4961
AGATATTACCCAGAAGCGATATCCAATAGTAGCCAACTCTCTCGCTCTCTATGTGTATGTATGTATCTTGCTATCCATATATGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACGATATAACCCGAAACCACACTGGCCAGGAATAGCAAATCCA
>wjj76b12.b1:303-467
AGATATTACCCAGAAGCGATATCCAATAGTAGCCAACTCTCTCGCTCTCTATGTGAATGTATGTATCTTGCTATCCATATATGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACGATATAACCCGAAACCATACTGGCCAGGAATAGCAAATCCA
The ortholog was found in 5 of the 7 lines. It as not found partially in w501 not found in c1674.
Corrected alignment:
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:1267640-1267803 + | AGATATTACC--CAGAAGCGA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GTATGTATGTATCTTG---------------CTATCC---------------ATATA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCACACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA |
| droSim1 | wjj76b12.b1:303-467 + | AGATATTACC--CAGAAGCGA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GAATGTATGTATCTTG---------------CTATCC---------------ATATA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA |
| droSec1 | super_10:1091085-1091248 + | AGATATTACC--CAGAAGCAA-----------------------TATC------------------------CAATAGTAGCCAA-CTCTCTCG--CTCTC--T----------A----TGT--GAATGTATGTATCTTG---------------CTATCC---------------ATTTA--TGTATATCCATATCAGAGAGCCAGGATTGGTTGAGACCATACG------ATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA |
| droYak2 | chrX:1175521-1175702 + | AGATATAACC--GAGAAGCAA-----------------------TACC------------------------CAATAGTAGCCAA-CTCTCTCGCTCTCTC--TGCGTCTCTCTA----TGT--GTATGTATGTATTTCG---------------CTATCC---------------ATATA--TGTATATCCATGTCAGAGAGCCAGGATCGGTTGAGACCATACTATATCTATATAACCCGAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAATCCA |
| droEre2 | scaffold_4644:1251466-1251631 + | AGATATAACC--CAAAAGAAA-----------------------TACC------------------------GAATAGTAGCCAA-CTCTCTCG--CTCTCTCT----------A----TGT--GTATGTATGTATTTCG---------------TTATCC---------------ATATA--TGTATATCCATGTCAGAGAGCCAGGATCGGTTGAGACCATACT------ATATAACCCAAAACCATACTGG-CC-AGGAATA---------------------------------------------GCAAGTCCA |
| droAna3 | scaffold_13117:1856374-1856503 - | --------------------------------------------------------------------------------------CTCTCTCT--CTCTC--TGTGTCTCTCTAAATGCAT--GTATGTATGTGTTGTA---------------TTATCC---------------GTATATATGTATATCCATGTTAGAGAGCCAGGACGGGTTGAGATT----------------GCCCAAGA----ACTGG-CCTAGGAATA---------------------------------------------GCAAAT-CA |
| dp4 | chr2:10126391-10126530 + | GAATAAT--CCATA-AACAAA-----------------------TATC------TA----------------T-GTAGTCA-CAT-CTATCTCT--CTCTC--T----------A----TAT--ATCTCTCTCTCTCTTT---------------CTTTAT---------------TTGTA--CATGTATTTATTTCATGGGTTTAGTTTTGC---AAATGGTATA------AAACATCTCCAAAATACATT------------------------------------------------------------------- |
| droPer1 | super_2:4840479-4840636 - | TAATATATTG--GAGTAGCAA-----------------------TATC------------------------TATTTGTATTCAG-ATTTGTAT--TTATT--T----------A----TGT--GTTTGTGGTGATACAG---------------ATATATA--------------GTATA--TATAGAAATATATTTTAAAATCA---TAGGTACATACAGTATA------TTGTATCCCTATCCAATGCATA-T-----GTGA---------------------------------------------ACGTACTTA |
| droWil1 | scaffold_180700:3267577-3267741 + | AAATATCATA--CCCA-AAAA-----------------------TATA------------------------TACTACTACACAACCTCTCTCT--CTCTC--T----------C----TAT--CTATCTATCTATCTTTGAACATAAAATGTACCTAT--ACTAAAACAAAAACTCTATA--TCTAAATCGTTGTGCT-TACCATTCATTTTCTACTACTATACT------ATATAGGGCGAAAC------------------------------------------------------------------------- |
| droVir3 | scaffold_12855:2148540-2148695 + | ATA----ACC--CAAAAGATA-----------------------CCTC------------------------AATTTGCATATAT-ATCTATGT--CTATA--T----------A----GAT--ATATACATACATATAT---------------ATATAC---------------ATATA--TATATATAAATATATGTGTGCGTGCATTA----TCGTCTTGTG------ACTAGGTCCAGAACTTTACAGG-TG-CGCAGTG---------------------------------------------TCGAAATCA |
| droMoj3 | scaffold_6496:26031347-26031515 + | TGATGCCACC--CAGC------------------------------CC------------------------CCACCGCCTCCTG-CTCCCTCC--CTCTC--TATGTTTATATG----TGT--ATATGTGTGT---------------------GTGTCT---------------GTGTG--TTTGTGTCCCTTC--------------------GATTGGCG------------------------TGCCTGAAT-GGCTGTGAAAACACAGCCAGTTGCAGCTGTATCCACAATCATTATCACAAAAGCAAACTAC |
| droGri2 | scaffold_14853:6570585-6570746 + | AAAAACAAAA--AACAAACGAAGTAACAGCCCAAGCCGACAATGGCTGAATATATATGTTATGTATTTGTATT-ATTGTC------------GT--GTATA--T----------A----TATCTATATATGTATATTACA---------------CTAT---------------------------------------------------------ATACTATATG-----TATATATATATAGACAATGTCTG-AT-GGCTATG---------------------------------------------CCAAAGCCA |