dme-mir-4954
Changes
>dme-mir-4954
ATATAAGTGTTCGATTTGGCGCTTGGAATCGATACCCGAGCCATGATAGATTGAAGTCAACCCAATCGATCGCGGTTCGAGTGCTCGAGTCTTGTGCGCCGGCATGCTTGAGATGTCCACTA
>vgb65a08_5.b1:263-385
ATATAAGTGTTCGATTTGGCGCTTGGAATCGATACCCGAGCCCTGATAGATTGAAGTCAACCCAATCGATCGCGGTTCGGGTGCTCGAGTCCTGTGCGCCGGCATGCTTGAGATGTCCACTA
The ortholog was found in 2 of the 7 simulans line.
Corrected alignment:
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:1923021-1923142 - | ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGATACCCGAGCCATGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGAGTGCTCGAGTCTTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA |
| droSim1 | vgb65a08_5.b1:263-385 - | ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGATACCCGAGCCCTGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGGGTGCTCGAGTCCTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA |
| droSec1 | super_10:1708076-1708197 - | ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGACACCCGTGCCCTGATAGATTGAAGTCAA-CCCA-ATC----G----------ATC-GC-GGT-TCGGGTGCTCGAGTCTTGTGCGCCGGCATGC-TTGAGAT---GTCCACTA |
| droYak2 | chrX:6403257-6403382 + | ACATAAAAGTTCA--------ATTTGGCGCTTGGAATCGTAACTCGAGCCCTCAAAGATTGAAGTCAAATGCA-ATC----G----------ATCCGG-GGTGTCGAGTGCTCGATTCTGGTGCGCCGGCATGCTTTGAGAT---GTCCACTA |
| droEre2 | scaffold_4644:1895276-1895400 - | ATATAAGTGTTCG--------ATTTGGCGCTTGGAATCGAACCTCGAGCCCTGACAGATTGAAGTCAA-CCCAAAAC----G----------ATC-CCGGGG-TCGAGTGTTCGAGTCCGGTGCGCCGGCATGCTTTGAGTT---GTCCACTA |
| droAna3 | scaffold_12929:1917028-1917098 - | ATATCCTTGACTT-------------------------CATAA-GGAACAATGA---------------------------------------TC-AT--GT--------------TAAGGTTCTCAGGCATGTCTCGAGATTATATCGAATC |
| dp4 | chrXL_group1a:2597066-2597203 - | ATATAAATACATACTGCATAGTGTAGCAGAATGGACTCGGAACTCGATCCATGCATGCCACATGCCACATGCC-ACATGTCGCAGAGGGGGCAGC-GT-GGC-TCGAGTGCCAGAGTCCGGCGAG-------GC-ATGAGAC---TACTTACC |
| droPer1 | super_28:1034311-1034357 - | A--------------------------------------------------------------------------------------------GC-GT-GGC-TCGAGTGCCAGAGTCCGGCGAG-------GC-ATGAGAC---TACTTACC |
| droWil1 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6473:2911987-2912050 + | ATATATGTGTGTG--------TGTTTGTGTATTGTATTTAGATTTGAGCTATAAAATGTTTAATAAAA-CTCA-------------------------------------------------------------------------------- |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------------------------------------------- |