dme-mir-4953
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr3R | 18412168 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.438 | 0.563 | 0 | 0 | 16 | Suggested base change does not agree with neighboring species |
5' flanking region |
| droSim1 | chr3R | 18412183 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0.688 | 0 | 0.063 | 0.25 | 16 | Genomic Error | 5' flanking region |
| droSim1 | chr3R | 18412272 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.786 | 0.214 | 14 | Genomic Error | 3' flanking region |
Changes
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:18599846-18599969 + | CGTAAGAATA-------------TTG-------CACTAAAGTTCACAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTATTTTTTATTGAAGGTCATGGACATCCTTGAACCGATTTTGCAACATG-----CATGT |
| droSim1 | chr3R:18412164-18412275 + | CGTAAAAATA-------------TTG-------CACGAAAGTTCGCAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTGTTTTTTATTAAAGGTCATGGACATCCTTGAACG--------------------GTGT |
| droSec1 | super_0:18960705-18960813 + | CGTAAAAATA-------------TTG-------CACGAAAGTTCGCAGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCAATAAAGTTTTGTTTTTTATTAAAGGTCATGGACATCCTTGAACG--------------------GTGT |
| droYak2 | chr3R:19450585-19450700 + | TGCTCAAATT-------------TTG-------CACGAAAGTTCGATGGCGACCATGA-AT---GCGAATGAAG----A--------ATAT---------------------TTACCATTAGTGTTTTGCTCATTATTGAAGGTCATGGACATCCTTGA-----TTTTGCAAAATG--------TT |
| droEre2 | scaffold_4820:9473651-9473779 - | CGCTAAAATA-------------TGG-------CACGAAAGTTCACTGGCGACCATGA-AT---GTTAATAAAG----A--------ATAT---------------------TTACCATAAAGATATGTTTTTTTATTGAAGGTCATGGACATCCTTGAACCGATTTTGCAATATGTTCTACGTGT |
| droAna3 | scaffold_13340:12717426-12717507 - | GGGGAAAAAA-------------TGA-------AAAGAA-----ACAAATGACCTTAGTAGGTCAGTGACTAAATTTTTGCCCATAA----GT-----------------------------GATTTAATCGTATATCAA---------------------------------------------- |
| dp4 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droWil1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| droVir3 | scaffold_12822:414561-414651 - | TGCAAGCAAA-------------TTT-------TGCCTAAGTTCTGA------------------CTAATAACT----A--------ATGT---------------------ATGTACTTAATGTTATTGTGATAAATTAATGTTATTTGTAACCAA------------------------AATGT |
| droMoj3 | scaffold_6540:33042485-33042630 - | CGTAGTTTGACCACATAGAGACATCAAGTCTAAGAGGAAAACTCA--------TTTGG-AC---ACTGATTAAAAATCAGTCCCGAT----GAGAGCGAT------------AT---ATTAACATTAATTTTCTTATTGCATTTTACGTATATTTTTTTTTTGCTTTTAACA---------TACAT |
| droGri2 | scaffold_15074:3394740-3394844 + | GTATGATACA-------------------------TTAAAGTTCTCCATAATCAATTT-GT---GT-------------------------GTGTGTGTGTCATCGACAAATTTACCATCTTAACTACACTTATTTTCAAAAT-------------------A-TTTCACATA--------TATTT |