dme-mir-4943
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2L_random | 601578 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0.7 | 0.3 | 0 | 0 | 10 | Genomic Error | 3' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:16528359-16528506 - | ATTTTAAACAACTA-TTTCGG-------ATCGTTTG---------------AATGACCAATTTTGT-------------CTTTTATTTTCTCT--G--------------T-G-----TTTT-----CAGTTAATG-AAAGAT-AG-TGAACACAGTGCTAAATGAAAGATAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droSim1 | chr2L_random:601476-601603 - | ATTT------------------------ATTT-TTG---------------AATGACCAATTTTGT-------------CTT---TCTTCTCT--G--------------T-C-----GTTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droSec1 | super_7:174891-175018 - | ATTT------------------------ATTT-TTG---------------AATGACCAATTTTGT-------------CTT---TCTTCTCT--T--------------T-C-----TTTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACCCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droYak2 | chr2R:4574442-4574584 + | ATTTTATAAAACTA-TGGGGG-------ATAC-TTA---------------GATAATTAATTTTGT-------------CAT---TGTTCTTT--G--------------T-C------TTT-----CAGTTAATG-AAAAGT-AG-TAAACACAGTGCTAAATGAAAGAGAATGAGACGCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droEre2 | scaffold_4845:19592406-19592554 - | ATTTTATGCAACTA-TTGTGT-----GTATCT-TTA---------------AATGACTAATTTTGT-------------CAT---TCTTCTCT--G------TTT-----T-T-----TTTT-----CAGTTAATG-AATAGT-AG-CAAACACAGTGCTAAATGAAAGAGAATGAGACGCAGTCGACAGGACCC---------AAGAAGACGATGTTGATTG |
| droAna3 | scaffold_12916:16031637-16031788 + | ATGTT------------------------TAA-ATG---------------ATTAAAAAATTATGTTCAACTAATTATTAA-------TTTAT--A------TTTT-ATTGTCTTCCCATTA-----CAGTTAATGAAAAAGT-AATTTAAAAAATCGCTAAATGAAAGAGAATGAGACCCAGTCGACATTTCCC---------AAGAAGACCATGTTGATTG |
| dp4 | chr4_group3:8251613-8251715 - | TT-----------------------------------------------------------------------------------TGTTCCTTTTC--------------T-C-----TTTA-----CAGTTATTTGCCAAGC-AG--AAGAAAAGTGCTAAATGAAAGAGAATGAGACACAGTCGACAGACGAA---------CAGAAGACGATGTTGATTG |
| droPer1 | super_1:9700572-9700674 - | TT-----------------------------------------------------------------------------------TGTTCCTTTTC--------------T-C-----TTCA-----CAGTTATTTGCCAAGC-AG--AAGAAAAGTGCTAAATGAAAGAGAATGAGACACAGTCGACAGACGAA---------CAGAAGACGATGTTGATTG |
| droWil1 | scaffold_180772:4810613-4810759 - | AAGTTTACCAATTAATAGCAA-------ATTG-TTGGTATTTCCATTTTAAAATTGCTAACATTTA---------CCTTAA-------TTTCT--C------TTCT-TTTC-T-----TTTT-----CAAT---------TCC-AG-CTTACGTTGCTATAAATGAGAAAGGATCAA------------GATCAA---------ACGAAAAGGATGTTGATTG |
| droVir3 | scaffold_13052:1601321-1601473 - | ATATTGCGCAACCA-TTCTGGTCCGAATTTCA-TTG---------------AGTCAGTCATTTTGG----GTAACTCTT------------GA--GTTTATTTCTTAATTGTC------TTTCGCTGAAATTGTGCAATAAAT-AA-CA---ATTT---------------TACCATCAGCATTAGCCAGCACAC---------ACACGCACGCTATCGGTTT |
| droMoj3 | scaffold_6500:21042727-21042874 - | AATTA------------------------TAA-TTG---------------AACACTTGA-TGCGATTGCCAAATTTTTGAT---TTTTGGTTCTA--------------T-T-----TTTA-----GAGTTACAG-CTAAAT-GA-AA---ACTATACCAATTATAAAATCAAAAGGGCTACACAAGAACATTTATGATTTCAAAGAAAAGTGTTTCATTTG |
| droGri2 | scaffold_14822:853797-853916 - | GCATG-----------------------------------------------ATGACTTGTGGTCT-------------CTA---TTCTATAT--G--------------C-T-----GGTT-----GAGTTTGTG-AATGGTCAG-TTGCCGTGGCGAAAGATAAAAGACAAG--GAACAGGTTGGATTGACCA---------AAGAGAAATATGATCATAG |