dme-mir-4939
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2R | 17459578 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.154 | 0 | 0 | 0.846 | 13 | Genomic Error | miR |
| droSim1 | chr2R | 17459613 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0.067 | 0.2 | 0 | 0.733 | 15 | Ambiguous - Suggested base change does not agree with neighboring species |
3' flanking region |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2R:18872718-18872857 - | ATGCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGATCTCTACCAATTTTCCTTGCACTCT------TTGTCCTTTCCAAAAGTGACACGGGT----GCAGGTGAAGATTCG---GAAGAGGACGACGAAAACGACT---GCAAC-CGGACGACTCTTGGT |
| droSim1 | chr2R:17459524-17459663 - | ATCCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGAGCTCTACCACTTCTCCTTGCACTCT------TTGTCCTTTCCAAAAGCGACACTGAT----GCAGGTGAAGATTCG---GAGGAGGACGACAGCGAAGACT---GCAAC-AGGACGACTCTTGGT |
| droSec1 | super_9:2164747-2164886 - | ATCCACATTTATTTGGCATCATG------------------------------------------C---------------------------------------TTCTGCGAGCTCTACCACTTCTCCTTGCACTCT------TTGTCCTTTCCAAAAGCGACACTGAT----GCAGGTGAAGATTCA---GAGGAGGACGACAGCGAAGACT---GCAAC-AGGACGACTCTTGGT |
| droYak2 | chr2R:18832811-18832950 - | AACCGCGTTTATTTGCCAAAATG------------------------------------------C---------------------------------------TGCTCCGAGCTCTACCACTTCTGCTCACACTCTGTGTGTTGGTCCTCTCCAACGACGACACGGAT----GCAGATGAAGAAGAG---GAAGAGGACGA------CGACT---GCAAC-AAGGCGACTCTTGGT |
| droEre2 | scaffold_4845:20234099-20234238 - | AACCACGTTTATTTGCCATAATG------------------------------------------C---------------------------------------TGCTCCGAACTCTGCTC------CTTACGCTCTTCGTGTTTGTCCTTGCCAAAAACGATACGATT----GCAGAAGTAGAGGAA---GAGTCGGACGAGGACGAAGGAT---GCAAC-AAGGCGACTCTTGGT |
| droAna3 | scaffold_13266:15204126-15204261 - | ATTTAAGA-GCTTTTCCCTTCAAAGCCT----------------------------------------------------------------------------------------------AAACAGTTGACACAAAATGTGGCTACCCTTCTTGCTAGTGGCACTGCC----TTGGGGGACTGTGGTGGG---GGGAGGTCCTCTGACATTGGCCAATCTTAGCCGAATCATTGGA |
| dp4 | chr3:14089101-14089284 - | AAGCA-ATTAGTTTGCCATTTGCCATCTTATCGGGGTAATACCCAATCCAATTTATTGACCAATTCGAGATAGTCCCAAAGCTTTTCGCTGATTGCAACGATCCATTCCAAAGAAATTTT----------------------------------------------AGTAACTCCCAGAACAACAAAATGAA---CAAAGCTCGATCCGCGTTC---GCCGC-CGCCCTTCTTTTGCT |
| droPer1 | super_4:1228949-1229132 + | AAGCA-ATTAGTTTGCCATTTGCCATCTTATCGGGGTAATACCCAATCCAATTTATTGACCAATTCAAGATAGTCCCAAAGCTTTTCGCTGATTGCAACGATCCATTCCAAAGAAATTTT----------------------------------------------AGTAGCTCCCAGAACAACAAAATGAA---CAAAGCTCGATCCGCGTTC---GCCGC-CGCCCTTCTTTTGCT |
| droWil1 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | scaffold_6496:24343095-24343103 - | AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGC |
| droGri2 | scaffold_15112:3934700-3934745 - | ATATTCAATATGCT-------------------------------------------GAGCACATC---------------------------------------TTCTGAAAGCATTTCAGACTTTC-------------------------------------------------------------------------------------------------------------- |