dme-mir-375

dme-mir-375

Changes

D. ananassae through D. grimshawi substitutions in the miR* region are all supported by trace reads.

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chr2L_random

38981

A

3

0

0

0

0

0

0.364

0.636

0

0

11

Genomic Error

5' MOR

Corrected Alignment:

dme-mir-375

Species	Coordinate	Alignment
dm3	chr2L:857527-857647 +	CATCCGAAACCC-------------------------------CTTCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T
droSim1	chr2L_random:38968-39087 +	CATCCGAATCC--------------------------------CTCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T
droSec1	super_14:828161-828280 +	CATCCGAATCC--------------------------------CTCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT-----------C---ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T
droYak2	chr2L:841557-841670 +	CATCCGAGTC------------------------------------CCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT----------------GCCTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTGG--T
droEre2	scaffold_4929:914698-914811 +	CACCACC------------------------------------ATCCCGGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---AT----------------GCCTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-ACTAAAGCGCCACGTCG--A
droAna3	scaffold_12916:2746986-2747121 +	CCACGGAAA------------------AGACACCCCACGGAAA-CGAGGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AT-----------CGCAATGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG-TTGCAAACGCCACGTGG--T
dp4	chr4_group3:5649077-5649230 +	CATCCAAGGCCTGTGCCTGTGTCTGAGAGCCCACCCACCCGAA---TAGGGCAGCGAATTACTTGGGCCAGGGGAATTCAAACTGTG---AT-----------CGCAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTC-AAGTAAACGCCACGTGGGTT
droPer1	super_1:7140235-7140385 +	CATCCAAGGCCTGTGCCTGTGCTTGAGAGCCCACCCACCCGAA---TAAGGCAGCGAATTACTTGGGCCAGGGGAATGCAAACTGTG---AT-----------CGCAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTC-AAGTAAACGCCACGTGG---
droWil1	scaffold_180772:2278802-2278947 -	AATTTAAAACCGTTTTCCATTTC-------------ATTT---TTTGGGGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AAT-----TATTTCAAAATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCGTACAATTGCGACACGTGG--T
droVir3	scaffold_12963:19405390-19405507 +	CATTCAAAGT------------------------------------TCGGGCAGCAAATTACTTGGGCCAAGGGAATGCAAACTGTC---AA-----------CGCATTGCAATAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCA-AC-ATAACGCCACGTGG--T
droMoj3	scaffold_6500:23808221-23808350 -	TGTTCAGTGTATGCTC---------------------------CTGCAGGGCTGCGAATTACTTGGGCCAAGGGAATGCAAACTGTTCGAAA-----------AGCATTGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCG-A-TAAAACGCCACGTGG--T
droGri2	scaffold_15252:7270330-7270448 +	C-----------------------------------------------GGGCAGCGAATTACTTGGGCCAAGTGGATGTAAACTGTG---AAAGCGCATTTTGCATATAACAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCG-A-TATAACGCCACGTGG--G