dme-mir-3645
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chrX | 4275748 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.455 | 0 | 0.455 | 0.091 | 11 | Ambiguous- This position appears tri-allelelic |
Loop |
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chrX:5516298-5516464 - | AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------GCACTGGAAGTGCGCTTTCCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCTTCATTGTTTTCCTTTCTTTCCCCTCTCTCTCTC------C---CCGCAGGCAGCTTATACCGAG |
| droSim1 | chrX:4275639-4275796 - | AAACAAATAGAAATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------G---------TGCGCTATTCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCCTCATTGTTTTCCTTTCTTCCCCCCCTCTCTCTC------C---CCGCAGGCAGCTTACACCGAG |
| droSec1 | super_4:1240682-1240837 + | AAACAAATAGAAATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGATC------G---------TGCGCTATTCGGCGCCTTTGGAAGCCAG-----------------------------------------CACTCAAGTTTCCCTCATTGTTTTCCTTTCTTTCC-CCCTCTCTCA-------C---CCGCAGGCAGCATACACCGAG |
| droYak2 | chrX:2953226-2953406 + | AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGATGCTGTTTACTGTTTACAACCGCTTTCGCACTGGAAGT-CGGTTTTCGGCGCCTTGGAAAACCAA-----------------------------------------CACTCAAGTTTCCTTCTTTGTTTTCCTTTTCTCTCCCTCTCTCTCTTTCTCTCTCTGTCGCAGGCCGCTTACACCGAG |
| droEre2 | scaffold_4690:2867616-2867787 - | AAACAAATCGATATGGTGAGTGC---AG-GC----------------TGTTTAT----------TGCGGCGCTGTTTACTGTTTACGGTC------GCACCGCAAGT-CGCTTTTCGGCGCCTTGGAAAACCAA-----------------------------------------CACTCAAGTTTCCCTCTTTGTTTTCCTTTCTTCTCCCTCTCTCTCTCACTCTCT---TCGCAGGCAGCTTACACCGAG |
| droAna3 | scaffold_13117:2022234-2022400 + | AAACAAATCGATATGGTAAGTGCGTGAA-GTAGGCAACATGACACTTTGTATAT----------TTGACAACAATTGAATGTTTACGGG--------------ACCTC--CTATTTCCCGC-TTCGGCAGCAACGA-TG-----------ACGACGAC-----------------GACTCATGTTTTCCT--TTGTTTTGTTGTT---------------------------TTTCAGGCAGCTTACACCGAG |
| dp4 | chrXL_group1a:8129365-8129509 - | CAACAAATCGATATGGTAAGTGGGCTGA-AC----------------AGTA-AT------------TGATATCGTGGCCAATATATAGCCGCT-ACGTATCGTATG---------------------------------------------GCTTTTCCACTGAGTTTTGCTGGGAGCTAATGTGTTCTT--TTGTT--TGG-T------------------------T---TTACAGGCAGCTTACACCGAG |
| droPer1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| droVir3 | scaffold_12928:4987995-4988105 + | T---CAATCAATATGGTAAGTTGGCCAAAAT----------------TGTT-GTTGCT------TTT------------ACGACACGTACATT-GTTTAT--------------------------AGTGTGTTTATTCTTGCTACTTT--------------------------------------------------TGC-A------------------------T---TTACAGGCAGCTTACACCGAG |
| droMoj3 | scaffold_6359:3485302-3485418 + | -------TCAATATGGTAAGTTGGC-ACAGC----------------TGTT----------------------------------------------------------GCTATT-----TTTTAGAGAGCAAATA-ATATGTTTCGTTTGTTTTTACAATTG----------------------------------------TTGTCTTTTTCTCTTGTTA------T---TTACAGGCAGCATACACCGAG |
| droGri2 | scaffold_14853:9687493-9687620 + | CATTAAATCAACATGGTAAGTTGTATAA-AT----------------CTATTTTTGCAGCTATCTGCAGCATTGTGTGCACTATATACACATT-AAT----------------------------GAGTGTAATAA-TTTTGTTGTTTT--------------------------------------------------TGT-T------------------------T---TTACAGGCAGCTTACACCGAG |