dme-mir-313

No changes

This miRNA belongs to the dme-mir-310 - 313 cluster
Note that the D. grimshawi ortholog is confident in the alignment even though it has discordant substitution patterns and it does not fold into a hairpin structure. This region is spanned by several trace reads which bolsters its confidence.
This miRNA appears confidently lost in D. pseudoobscura.
- Both the genome assembly and the trace reads for D. pseudoobscura were searched but the correct ortholog could not be found.
- The approximate location where this ortholog should lie is confidently assembled given it is spanned by trace reads:

dme-mir-313

Species	Coordinate	Alignment
dm3	chr2R:16471680-16471780 -	TCGTTCT-----AGCCAACAATTTTCTGC-TGCGGATGGGGGCAGTACTGTTTTTT--TAACAT--TGAGTATTGCACTTTTCACAGCCCGA----------AAATGTTAGCAACT-GCCTT
droSim1	chr2R:15132971-15133071 -	TCGATCT-----AGCCAACAATTTTCTGC-TGCGCATTGGGGCACTACTGTTTTTT--TTAAAT--TGAGTATTGCACTTTTCACAGCCTTA----------AAATGTTAGCAACT-GCCTA
droSec1	super_1:14025885-14025985 -	TCGATCT-----AGCCAACAATTTTCTGC-TGCGCATTGGGGCACTACTGTTTTTT--TTTAAT--TGAGTATTGCACTTTTCACAGCCTTA----------AAATGTTAGCAACT-GCCTA
droYak2	chr2R:12724540-12724640 +	TCTACGT-----AGCCAACAATTTTCGGC-TGTGGATTGGGCTAGTACTGTGATTT--TAGCAT--TAAGTATTGCACATTCCCCAGCCTGA----------AAGTGTTAGTAACT-GCCAA
droEre2	scaffold_4845:10618281-10618381 -	TCGATGT-----AGCCAACAATTTTCGGC-TGTGGAGTGGGCTAGTACTGTGATTT--TAACAT--TGAGTATTGCACATTCCCCAGCCTGA----------AAGTGTTTGCATTT-GCCAA
droAna3	scaffold_13266:4132526-4132623 +	TT--TGT-----AGTCAGCATTTCCAGAC-TGTGGTTTGGGCAGATACTACATTT---TA-GGA--TCAGTATTGCACATTCCCCAGCCTGG----------AAACGCTTGCGACA-GACCT
dp4	Unknown	--------------------------------------------------------------------------------------------------------------------------
droPer1	super_4:2566453-2566554 +	TTCGTGTTC---GGTGGATACCTTCAAGC-TGGGGGATGGGCA-ATACTGTGTTGT--ATTTGA--ACAGTATTGCACACCCACTGGCCTGA----------AAGTGCCTACTGCT-GGGTT
droWil1	scaffold_180700:3452993-3453102 +	TTAATTATTTGTCCAAATTTAGTTCTGGC-TGCGGTTTGTGCAAATTACTTATTT---TTTTGT--AAAGTATTGCACAACCTACAGCCTGGCACTA-----AATGGAGAAAAATC-ATCAA
droVir3	scaffold_12875:13669100-13669187 -	TT---------------------TTCGGC-TGTGGTCAGTGTCAATTCTTTTTTTT--TATTTTTACAAGTATTGCACTTTTCACGGCCGGA----------AAAATTGAGATTCCATTTAA
droMoj3	scaffold_6496:9090655-9090750 -	TT--TTT-----TGCATTCGTTTTCCGGT-TGTGAATTGTGTCAATTCTTTTTATT-----TTA--CAAGTATTGCACTTTTCACGGCCGGA----------AAAAGGATAAAATA-TTTAA
droGri2	scaffold_15245:17564118-17564229 +	TCATTAT-----CCCGAACAACATCATTC-CGCGCTCGGCTTTAGAATTTGTTCCTTATTTTGT-GAGGATAATTTACAATTCGAAGATA-ATATTGGCAGGATATGTTA-CAGTT-CCTCT