dme-mir-312

This miRNA belongs to the dme-mir-310 - 313 cluster
Better D. persimilis and D. grimshawi orthologs were found in genome searches.
The miRNA appears confidently lost in the D. virilis and D. mojavensis lineage:

Here is the ortholog found by searching the trace data and its alignment with the D. pseudoobscura ortholog.

>dps-mir-312
GGGCAATACTGTGTTGTATTTCACCAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAAA
>gnl|ti|732455623:23-94
GGGCAATACTGTGTTGTATTTGAACAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAA-

Changes

dme-mir-312

Species	Coordinate	Alignment
dm3	chr2R:16471546-16471641 -	AATTAAGTT-TGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTTAACTAGTATTGCACTTGAGACGGCCTGATTA--CTTTA-----AAACGAATC
droSim1	chr2R:15132834-15132929 -	AATTAAGTT-TAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTAAACTTGTATTGCACTTGAGACGGCCGAATTA--CTTTA-----AAAAGAATC
droSec1	super_1:14025748-14025843 -	AATTAAGTT-TAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATT--TTTAAACTTGTATTGCACTTGAGACGGCCGAATTA--CTTTA-----AAAAGAATC
droYak2	chr2R:12724685-12724781 +	AATTGCGTT-TGAAGCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTA-TTAAAGCTAGTATTGCACTTGAGACGGCCGGATTA--CTTTT-----AAACGAATC
droEre2	scaffold_4845:10618147-10618242 -	AATTAAGTT-TGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATT--TTTAAGCTAGTATTGCACTTGAGACGGCCGGATTA--CTTTT-----AAACAAAAC
droAna3	scaffold_13266:4132676-4132765 +	TCTACAAT--------TTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTT-TTTATACAAGTATTGCACTTGAGACGGCCGAAATA--TAGTG-----GATCTAAGC
dp4	chr3:8679756-8679828 +	G---------------------------------GGCAATACTGTGTTGTATTTCACCAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAACA
droPer1	gnl\|ti\|732455623:23-94 +	G---------------------------------GGCAATACTGTGTTGTATTTGAACAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTGCTGGGTTCAA--
droWil1	scaffold_180700:3453141-3453235 +	CATAAACTCGAAAATTTTTTAGGTTCGTTTAGTCTGCAAATT-GTAAT--ATACGAAAATAATTGCACACTTCACGGCCGGAAAA--GTTCA-----AGTTAAACA
droVir3	scaffold_12875:13669041-13669063 -	AGCTATATT-T-----------------------------------------------------------------------------TTCA-----GGCCGTGTC
droMoj3	scaffold_6496:9090603-9090622 -	GTCTGCAAT-TTAAGCTTCTT-------------------------------------------------------------------------------------
droGri2	scaffold_15245:17564268-17564358 +	AAGCAAATC-TTCAGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTT---ATTTGACAAGCATTGCACTCTTCACGGCCGGATAA--AT---------GAGGGTCT