dme-mir-286

This miRNA belongs to a cluster which includes dme-mir-309, dme-mir-3, dme-mir-286, dme-mir-4, dme-mir-5, dme-mir-6-1 - 6-3.
No changes
- Many of the substitutions in D. ananassae through D. grimshawi's miR* region are supported by trace reads.

Uncorrected Alignment

dme-mir-286

Species	Coordinate	Alignment
dm3	chr2R:15548912-15549041 -	TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-G-A------AA-------GGTT----TCG--ATTAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G
droSim1	chr2R:14254346-14254476 -	TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCCAA-AGA------AA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G
droSec1	super_1:13063641-13063770 -	TTG-G--------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCCAA-T-A------AA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G
droYak2	chr2R:13623749-13623876 +	TAG----------GCAC--------T------CC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-A--------GA-------GGTT----TCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----TCA--G
droEre2	scaffold_4845:9749162-9749292 -	TAG----------GCAC--------T------GC----------AGTTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-G--------AA-------GGTT----TCG--ATCGA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGC-----ACACTG
droAna3	scaffold_13266:9731344-9731477 +	TTT-A--------GCAT--------C------AG----------AATTTTAAAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTCACA-A-A------AAAATT---GGTT----ACC--AACAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCATCAAGC-----TAA--A
dp4	chr3:12677574-12677700 -	AAA-A--------GAAG--------A------CA----------AATTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTACCA-----------G-------GGTT----CCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGG-----CCA--A
droPer1	super_2:8905966-8906092 +	AAA-A--------GAAG--------A------CA----------AATTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTACCA-----------G-------GGTT----CCG--ATCAA---GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGG-----CCA--A
droWil1	scaffold_180701:1651730-1651882 -	TAT----------GCAA--------T------TG-AAATT----ACTTTTAAAATTGAATGGCGATTGTCGGTATAGTCTCTTTTTCCAA-A--------AATCTTGTTTGTTTTTGCCA--ATCTAATAAGAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCAACAACCA--A
droVir3	scaffold_12875:4112084-4112243 +	GTG-----TTCCAGTATTCCAGTGTTTCAATTCCAATATTCCAGTATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTTCAAA-C--------AA-------TATA----CCATTATC--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACGTAT-----ATA--A
droMoj3	scaffold_6496:20936771-20936914 -	TCC-A--------GTGT--------T------CGAAAATTATAAAATTTTAAAATTAAATGGCGATTGTCGGTATGGTCTCTTTTTCAACAT-ATACACCAA-------ACAT----T------C--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAATT-----TCA--A
droGri2	scaffold_15112:2108802-2108953 -	TGTGTGTGTT---GCAG--------T-CAAACCCAG----CCAGTATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTGAACC-T-AAACTC------T---ATAT----ACA--ATA--TATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACATAG-----GCA--T