dme-mir-281-1

dme-mir-281-1

Changes

This miRNA is clustered together with dme-mir-281-2

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chr2R_random

2148173

C

2

0

0.007

0.001

0.992

1003

0

1

0

0

10

Invalid- cross-mapping of 281-2/dsim reads

miR*

Uncorrected Alignment:

dme-mir-281-1

Species	Coordinate	Alignment
dm3	chr2R:8057863-8057982 -	AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACTA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAG
droSim1	chr2R_random:2148092-2148211 -	AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AAGCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAG
droSec1	super_1:5602965-5603084 -	AATCGAATC-CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTGTGAT
droYak2	chr2R:8893333-8893452 +	AATCGAATC-CATATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--ATTCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCGCTATGAG
droEre2	scaffold_4845:17736182-17736301 +	AATCGAATA-CATATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--AACCA-TT-TAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGATGCACTATGAG
droAna3	scaffold_13266:2568740-2568853 +	CT---ATCT-CGAATGCGAATACGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA--TACCT---ATAAC---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGCTTCGCTCCGAT
dp4	chr3:418413-418523 -	AA---AACA-CGAATGCGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACG--TACCAATT-TAAT---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGTTGCGC----AG
droPer1	super_2:605310-605420 -	AA---AACA-CGAATGCGAATAGGTGAATAAAGAGAGCTGTCCGTCGACAGTCAACG--TACCAATT-TAAT---ACTGTCATGGAATTGCTCTCTTTGTATAATATTCGACGTTGCGC----AG
droWil1	scaffold_181141:3241875-3241979 +	AG---A-----AAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGTTAAACGA-TTTTAAA---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGT--------GAC
droVir3	scaffold_12875:19829913-19830024 +	AATCGTACC-CAAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--AACAA-ATGTAAT---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGCCC------
droMoj3	scaffold_6496:6376225-6376337 -	AATCGTAGCGAAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--AAAGA-TTGTAAA---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGCCC------
droGri2	scaffold_15245:18178188-18178294 +	AATT---AT-GAAAAGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGT--ATAAA-TTTTAAT---ACTGTCATGGAATTGCTCTCTTTGTATGATATTCGACGTTGC--------