dme-mir-2501
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr3L | 7572222 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0.389 | 0 | 0.611 | 18 | Ambiguous - The two alleles agree with either melanogaster or sechellia. | 3' flanking region |
Uncorrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3L:8104192-8104292 + | GGTGGTAAAAGTGGAGTAAGTTTGGAGTG----CCTGGGCTAAGAACTTCCATT---------------------------------------------------------CTGAAACTTAACTCTTGCAATCAAACTTTC------------------------------------------------------------------TTTCAGAACCAAGCGTGGCAG |
| droSim1 | chr3L:7572156-7572239 + | GGTGGTAAAAGTGGAGTAAGTTTGGAGTC----CCTGGGCTAAGAACTTCCATT--------------------------------------------------------------------------CAATCAAACTTTC------------------------------------------------------------------TTTCAGAACCAAGCGTGGCAG |
| droSec1 | super_0:391632-391715 + | GGTGGTAAAAGTGGAGTAAGTTTGGAGTC----CCTGGGCTAAGAACTTCCATT--------------------------------------------------------------------------GAAGCAAACTTTC------------------------------------------------------------------TTTTAGAACCAAGCGTGGTAG |
| droYak2 | chr3L:8691884-8691979 + | CGTTGTAAAAGTGGAGTAAGTTTGCGA----------------------------------------------------------------CTTACGTTC-CTTTTATATACCG-ACATACCGTCTTACAACCAAACTTTC------------------------------------------------------------------TTTCAGAACTAAGCGCGGCAG |
| droEre2 | scaffold_4784:3260723-3260819 - | GGTGGTAAAAGTGGAGTAAGCTTGCAA----------------------------------------------------------------CTTGAGTTATATCTTTTATCCCG-CTATACTTACTTACAATCAAACTTTC------------------------------------------------------------------TCGCAGAACCAAGCGCGGCAG |
| droAna3 | scaffold_13337:13543116-13543232 - | AGTGGTTAAAGTGGAGTAAGTGGCGT----------------------TTAAGGG------AGTGATG----------G---ATAGATGGACCTGAGTCT-TTTTTAGT---TGTTCTCTTTCTCTAACATTCATAATCCG------------------------------------------------------------------TTTCAGAAACAAACGTGGCCG |
| dp4 | chrXR_group3a:1131777-1131868 + | GGTGGTCAAAGTAGAGTAAGTGATCC----------------------CCACCGA------ACTATTGTGACTTTACGC------T-------------C-TAATTGGG----------------------TACATTTTTT------------------------------------------------------------------GTGCAGAACCAAGCGTGGCCG |
| droPer1 | super_23:1158678-1158769 + | GGTGGTCAAAGTAGAGTAAGTGATCC----------------------CCACCGA------ACTATTGTGGCTTTACGC------T-------------C-TAATTGGG----------------------TACATTTTTT------------------------------------------------------------------GTGCAGAACCAAGCGTGGCCG |
| droWil1 | scaffold_180727:72451-72556 + | AGTGGTCAAAGTACAGTAAGTACATGG-----------AATGACCAATCCAATTAACTATA--TA-TGTACATATATGT------T-------------A-AATCCAAC----------------------CATCTCTTTT------------------------------------------------------------------ATCCAGAAATAGACGTGGCCG |
| droVir3 | scaffold_13049:9356761-9356852 - | GGTTGTCAAAGTTGAGTAAGTTTCTA----------------------TCAAC----AATAACTA-AGCTTGGTTATGG------TA------------A-TAATTTG------------------------ACACTTTTC------------------------------------------------------------------TGTTAGAAATAAGCGCGGTCG |
| droMoj3 | scaffold_6680:11400964-11401055 + | CGTTGTCAAGGTTGAGTAAGTTTGTAGGC----TCTTAACT-----------------------GGCGAAACCAGATGA------T-------------C-TAATTAC-----------------------ACAATTTTCC------------------------------------------------------------------CATTAGAAACAAACGTGGTCG |
| droGri2 | scaffold_15110:6804388-6804550 + | CGTTGTCAAAGTCGAGTGAGTAATTTGGCAAAAACTGGCTT-------TTAATG-------------------AGATTACTCC--T-------------C-TTATCAG-----------------------ACAGTTCTCCAAACTCCTCATTTATCTTAGAGCAAATATCAGATTTAAAAATAAAATTATTTTTTCTTCTTTTGATCTTCAGAAATAAGCGCGGTCG |