dme-mir-2283
Changes
>dme-mir-2283-dm3
GAAAACTCACTCCTGAGCTGCTCCGAAAATATCA-----------TGAATACGACAATTATGTGCACATCATTTAGTATACGTGATATTTTAGGAGCAGCTAAATTATATTTAAAGT
>wcy63a10.b1:18-120
---------------AGTTGTTCCGAAAAAATCAATTTTAATGACAGGATGGGCAGATAATTGGGACATCATGTTGTATACGTAATATTTTAGGAGCAGCTCAATTATATTTAAAGT
The ortholog was found in only one of the 7 lines, nc48. It is still strange that the MAF still reports a better peices of the ortholog on the 3' end.
Corrected alignment
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr3R:5343231-5343336 + | GAAAACTCACTCCTGAGCTGCTCCGAAAATATCATGAATA-CG----------ACAATTATGTGCACATCATTTAGTATACGTGATATTTTAGGAGCAGCTAAATTATATTTAAAGT |
| droSim1 | wcy63a10.b1:18-120 - | A---------------GTTGTTCCGAAAAAATCAATTTTAATGACAGGATGGGCAGATAATTGGGACATCATGTTGTATACGTAATATTTTAGGAGCAGCTCAATTATATTTAAAGT |
| droSec1 | super_0:16553595-16553710 - | GACAACTCACTCTTGAGCTGCTCCTAAAATATCACGTATA-CGACATGATGTCCCAATTACATGCACATCCTGTCGTATACGTGATATTTTAGGAGCAGCTCAATTATATTTAAAGT |
| droYak2 | chr3R:9394463-9394539 + | GGCAACCCAC--------------------------TCTAAT--------------GTAATTGACACATCATGTCGTATACGTGATATTTTGGGAGCAACGCAATTATATTTAAAGT |
| droEre2 | scaffold_4770:16257712-16257788 - | GGCAACTCAC--------------------------TCTAAT--------------ATAATTGTCACATAATGTCGTATACGTGATATTTGAGGAGCAAGTCAATTATATTTAAAGT |
| droAna3 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| dp4 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droPer1 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droWil1 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droVir3 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droMoj3 | Unknown | --------------------------------------------------------------------------------------------------------------------- |
| droGri2 | Unknown | --------------------------------------------------------------------------------------------------------------------- |