dme-mir-13b-2

dme-mir-13b-2

No changes

All the substitutions in the miR* region of D. erecta, D. anannasae, D. mojavensis and D. grimshawi are supported by trace reads.
The flagged putative variants adjacent to the miR region of the D. pseudoobscura ortholog could be 3' untemplated adenylation.

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

dp4

chrXL_group1e

7000802

A

2

0.032

0

0.032

0.935

31

1

0

0

0

7

Invalid - RNA editing

3' MOR

Uncorrected Alignment:

dme-mir-13b-2

Species	Coordinate	Alignment
dm3	chrX:8985248-8985347 +	TCTAC-C---T------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GACAGCCAGC-CT
droSim1	chrX_random:2632466-2632565 +	TCTGC-C---T------------------------------CTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCCAGC-CT
droSec1	super_34:345603-345702 +	CCTGC-C---T------------------------------CTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCCAGC-CT
droYak2	chrX:12330556-12330651 -	CTTAC-C---C------------------------------CTG---------CTGTCTAGTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGCTG-GCCAGTC-----T
droEre2	scaffold_4690:6132295-6132393 -	TTTAA-ACCCC------------------------------CTG---------CTGTCTATTAGCGCGTCAAAGTGACTGTGAACTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCC-----C
droAna3	scaffold_13047:797460-797571 +	TGTCC-CGCTT------------------------------CTGCTTCATTACCTGTTTCCCAGCGCGTCGAAATGACTGTGACTTATGC----GTATTTGA-TGTCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGTGAAA-GT
dp4	chrXL_group1e:7000785-7000885 -	GCTAC-T---G------------------------------CTG---------CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGT----GTTTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC
droPer1	super_13:1553253-1553353 +	GCTAC-T---G------------------------------CTG---------CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGT----GTTTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC
droWil1	scaffold_180777:2053037-2053171 +	TCCCCCA-ATGTACCTACCCCTGCAACTGCTGTGCTTACAACTG---------ATGTCCATGGTCGCGTCAAAATGACTGTGAGCTATGTTAACCGGTCAGAAATTCATATCACAGCCATTTTGACGAGTTCGATG-GGCATACG----A
droVir3	scaffold_12970:9304312-9304422 +	TCTCTCG-CTG------------------C------TGCCAATG---------CTCCATATTGGCGCGTCAAAATGACTGTGAGCTATGTTGTTGCATTTGCCATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCA-----
droMoj3	scaffold_6473:13342549-13342650 -	TCCTC-T---A------------------------------ATG---------CTCCATATTTGCGCGTCAAATTGACTGTGAGCTATGT----TTATGAGATTATCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCACC-AA
droGri2	scaffold_15203:306998-307104 +	TCGTT-GC----------------------------TATCAGTG---------CTCCATATTGGCGCGTCAAATTGACTGTGAGCTATGTTGTTGCAGTTGTAATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCA-----