dme-mir-133
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2L | 20179926 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.294 | 0 | 0.706 | 0 | 17 | Ambiguous | 5' MOR |
| droSim1 | chr2L | 20179928 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.294 | 0 | 0.706 | 0 | 17 | Ambiguous |
5' MOR |
| droSim1 | chr2L | 20179931 | C | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0.235 | 0 | 0.765 | 17 | Genomic Error | 5' MOR |
| droSim1 | chr2L | 20180043 | G | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0.579 | 0.421 | 0 | 19 | Genomic Error | 3' MOR |
Corrected
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:20616602-20616729 + | CATTC--GA-GAA----------------------------------TTT--------CCACCTGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTT--TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAG-CCTA----------------GTGAAC |
| droSim1 | chr2L:20179920-20180047 + | CATTC--GA-GAA----------------------------------TTT--------GCACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTT--TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAG-CCGA----------------GCGAAC |
| droSec1 | super_18:496867-496993 + | CATTC--GA-G-A----------------------------------TTT--------GCACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTT--TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAG-CCTA----------------GCGAAC |
| droYak2 | chr2R:6964793-6964921 + | TATTC--CA-GAA----------------------------------TTT--------CCTCCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTTT-CCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGT-ACGA----------------GTAAAC |
| droEre2 | scaffold_4845:3836606-3836724 - | ATTT-------------------------------------------------------CCTCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTT--CCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAAT-TCGA----------------GTGAAC |
| droAna3 | scaffold_12916:7117508-7117634 + | TT--C--GT-GAA----------------------------------TGA--------TTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAT-CTTT-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGT-ACAA----------------GTGAAA |
| dp4 | chr4_group3:7699977-7700121 - | GACGC--GT-GTG----------------------------------TGC--------TTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAT-TTTA-TCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAA-ACAAAAGGCGCCAACAAATAATAAAG |
| droPer1 | super_1:9145698-9145865 - | TATTT--GT-ATGTG--TATTT---------GTATGTGACGCGTGTGTGC--------TTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAT-TTTA-TCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAA-ACAAAAGGCGCCAACAAATAATAAAG |
| droWil1 | scaffold_180708:2027542-2027651 + | T---------------------------------------------------------------ACAAC-ACTGAATGTAGCTGGTTGACATCGGGTCAGATCTAT-TTATTTGAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATCCCAACAAAAA-GCA-----------------ATGGAA |
| droVir3 | scaffold_12963:13475783-13475914 - | CAAAC--GA-AGATA--TATATTGCCAATCGAA--------------TC---------ACATTCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTAT-TTCT-GAAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGAAGCCAACAA------------------------------ |
| droMoj3 | scaffold_6500:24707638-24707772 + | CATGA--AATAAA-T--TGTGT---------------------TGTGTACTCAAACAAACATCCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGT-TTT--TCGAGAATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAGT---------------------------- |
| droGri2 | scaffold_15126:6389834-6389991 + | CAAAC--AA-AACTATATACATGATTAATTTGAA-------------T----------TTATTTACAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAT-TTAT-TCGAGTATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGTCAACAAGTGAACTTAAG-----AAC-AATAGTGAAA |