dme-mir-1009

dme-mir-1009

The orthologous gene appears lost in D. virilis and D. grimshawi. Flybase did not report an ortholog for CG3860.

No changes

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chr2R

18425686

C

3

0

0

0

0

0

0

0.389

0

0.611

18

Ambiguous - Suggested base change does not agree with neighboring species

Loop

Uncorrected alignment

dme-mir-1009

Species	Coordinate	Alignment
dm3	chr2R:19880562-19880652 -	CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTG-AGTTAC---CCGCG-ATGAGTATCTCAAAA---ATTGT-----TACATTTCAGAGCGATAGCTATCCA
droSim1	chr2R:18425639-18425729 -	CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTG-AGTTAC---CCGCG-ATGAGTATCTCAAAA---ATTGT-----TACATTTCAGAGCGATAGCTATCCA
droSec1	super_9:3164536-3164626 -	CTCTCCATTCAAGACGTAAGTGTAAGACTTTCTTG-AGTTAC---CCGCG-ATGAGTATCTCAAAA---ATTGT-----TACATTTCAGAGCGATAGCTATCCA
droYak2	chr2R:19858946-19859036 -	CTGTCCATTCAAGACGTAAGTGTAAGACTTTCTTG-AGTTAC---CCGCG-AGGAGTATCTCAAAA---ATTAT-----TACATTTCAGGGCGATAGTTACCCG
droEre2	scaffold_4845:21253645-21253735 -	CTGTCCATTCAAGACGTAAGTGTAAGACTTTGTTG-AGTTAC---CCACG-TAGAGTATCTCAAAA---TTTGT-----TACATTTCAGAGCGATAGCTACCCA
droAna3	scaffold_13266:5750531-5750620 -	CTATCGATTCAAGATGTAAGTTTTGAATACTTCTA-CTCTAT---CTTG--GAATGTCTCTCATAA---TTGTC-----CATCTTCTAGAACGATAGCTATCCA
dp4	chr3:7562600-7562686 -	ATGTCCATACAAGATGTAAGTTCGAGAATCCCA---------AACACATA-AGTTCTTTTTTAACA---T----CCAAATATTTTGTAGAGCGACAACATTCCA
droPer1	super_2:7758003-7758089 -	ATGTCCATACAAGATGTAAGTTCGAGAATCCCA---------AAAACATA-AGTTCTTTTTTAACA---T----CCAAATATTTTGTAGAGCGACAACATTCCA
droWil1	scaffold_180700:5103983-5104075 +	TTATCTATCCAGGATGTAAGTATTTAAAGTTATTTTCATAAT---GACG--GGAA---A-TCAATGATTTGCATTCA--CTCATTGCAGAGTGATAACCTCCCA
droVir3	Unknown	--------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6496:14788216-14788309 +	TTATCTCTACAGGAGGTAAGGACCAATTGGTA--A-AGTGAGAAATTGGA-AGAAATTTATTGAAA---TTTAT---ACTCGTGTTTAGGACAAGGAGTTCACA
droGri2	Unknown	--------------------------------------------------------------------------------------------------------