dme-mir-1002
Changes
| Species | Chrom | Pos | Ref base | Type | A | C | G | T | RNAseq Total | A | C | G | T | Trace Total | Decision | Partition |
| droSim1 | chr2L | 13506512 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.429 | 0.571 | 0 | 0 | 14 | Ambiguous | 5' flanking region |
| droSim1 | chr2L | 13506617 | A | 3 | 0 | 0 | 0 | 0 | 0 | 0.462 | 0 | 0 | 0.538 | 13 | Invalid- Clade-specific insertion | 3' flanking region |
| droSim1 | chr2L | 13506620 | T | 3 | 0 | 0 | 0 | 0 | 0 | 0.692 | 0 | 0 | 0.308 | 13 | Invalid- Clade-specific insertion | 3' flanking region |
Corrected
| Species | Coordinate | Alignment |
|---|---|---|
| dm3 | chr2L:13747594-13747712 - | TGT----------AT-------------------CGGAATT--------AA-------TTAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGAT-TTG-ATAT-AAA--AGTGTCGCATTGTATGACCTACTTAACTAGCTGATTTTGTATCCCAACATAATA--G |
| droSim1 | chr2L:13506512-13506649 - | TGT----------CGGAATAAATATAATAATAATCGGAAAT--------AT-------TTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-TTG-ATAT-AAA--AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATAAAA--T |
| droSec1 | super_3:14439-14576 - | TGT----------CGGAATAAATATAATAATAATCGGAAAT--------AT-------TTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-TTG-ATAT-AAA--AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATAAAA--T |
| droYak2 | chr2L:10159916-10160031 - | TATGCTTCGAAGTTTTAA------------------------------------------AAAAATTATATATTTAAGTAGTGGATACAAAAGGCGAT-T-G-ATAT-AAA--AATGTCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATCCCAACTTA------ |
| droEre2 | scaffold_4929:11719022-11719139 + | TCT----------AT-------------------ATT----AATTG----A-------T-CAAAATTATATATCTAAGTAGTGGATACAAACGGCGAT-TTG-GTAT-AAA--AATGTCGCATTGTATGACCTGCTTAACTAGCTGATTTTGTATCCCAACGTACAA--A |
| droAna3 | scaffold_12943:1815398-1815512 - | TCA----------TA-----------------------AATATCTGTGCAA-------A-CTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGAC-TAA-ATAA-AAT--ATACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTGCAAGCATC--------C |
| dp4 | chr4_group1:1722923-1723028 + | CCT----------CTCAA------------------------------------------AATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGAT-AAT-GTAAAAGA--ACTTTCGCATTGTGTGACCTACTTAAATGCTCGATTGTTTCAAGCAACCT------- |
| droPer1 | super_5:3483460-3483570 - | CCT----------CTCAA------------------------------------------AATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGAT-AAT-GTAAAAGA--ACTTTCGCATTGTGTGACCTACTTAAATGCCCGATTGTTTCAAGCAACCTCTAA--A |
| droWil1 | scaffold_180772:545437-545562 + | TCA----------TT--------------------TG----ATCTGGTCAT-------TGAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGAT-TCGTATTC-CATTGTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTTTCCAAACAACAAGATAATC |
| droVir3 | scaffold_12723:5043888-5043982 - | GCA----------AT---------------------------------------------GAAAATTGAACGCTTAAGTAGTTAATACAA-GGGCGAGTTTT-TTC----T--TGCATCGCATTGTGTGACCTACTTAAATGACAAATTTTCA--AG--AC--------A |
| droMoj3 | scaffold_6500:16664711-16664807 + | TGA----------T----------------------------------------------GAAAATTCAGCACTTAAGTAGTTGATACAA-AGGCGAA-TTT-AT-T-AAA--TTTATCGCATTGTGTGAGCTACTTAAATGACAGATTTTTA-T-AGTAC--------G |
| droGri2 | scaffold_15126:8057211-8057331 - | TGT----------AA------------------------ATATTTATAATCACTGTATT-GAAAATTTAACACTTAAGTAGTTGATACAA-GGGCGAGTTTC-ATA----A--AGTATCGCATTGTGTGACCTACTTGAATGAGAGATTTTTA--AGATACT--GTA--A |